Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq70150 500 6e-137
seq20023 273 2e-68
seq40223 219 3e-52
seq23781 208 5e-49
seq70328 168 5e-37
seq43829 123 2e-23
>seq70150
Length=2088832
Score = 500 bits (554), Expect = 6e-137
Identities = 450/565 (80%), Gaps = 0/565 (0%)
Strand=Plus/Minus
Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027
|||||| ||||| |||||||||||| ||||||||||||| | ||| || || || ||||
Sbjct 229014 ATTAATTGTTCTTTTCATATACTTCAGATTTGTACTTAATGCCTTTTTCCTCCTGGACAT 228955
Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087
|| |||||| |||||||||| | |||||| ||||| || | ||||| |||||| |
Sbjct 228954 CCAAAGGAACACCTGGATATTCTGGAAGAAGTTTATATTTTTCAAAATCAATTTCTGGGA 228895
Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147
|||| |||| |||||| |||||||||||||| |||||||| ||| |||||| || ||
Sbjct 228894 AAAACACATCACTTTCAAATTCTTGCATGATCCTTGTCACAAATAGTCTAAGATGGCCTG 228835
Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207
| | |||| ||||| ||||| |||||||| ||||| | |||||| |||||||||||||
Sbjct 228834 GCTTGTTCATGGCTTCCTTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTT 228775
Query 4208 TATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAA 4267
|||||| ||||||||| | ||| ||||||| ||| |||||||| ||||| || || | ||
Sbjct 228774 TATTTGTTAATTCTGGATCTTCAGTAAGTTCTAAGGCATCATCCAAACTTTTGGCAAGAA 228715
Query 4268 AATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTT 4327
||||||||| | |||| | ||||| ||||| | |||||||| | |||||||||| |
Sbjct 228714 AATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCA 228655
Query 4328 TTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAAT 4387
||||||| || |||||||| ||||| |||||||| ||||| ||||||||||||| ||||
Sbjct 228654 TTAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAAT 228595
Query 4388 TCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCA 4447
|||||||| || | | ||||| | ||||||||||||||||||| || || ||||||
Sbjct 228594 TCTGTTTAGCTTCTTCTGAAGAGATTGTAGTCATTCTTTGGAAATACTTGAATTCATTCC 228535
Query 4448 TAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCAA 4507
| ||| |||||| |||| ||| || | ||||| ||||||||||| || | |||| |
Sbjct 228534 TGAGTGGTGGCCAGGGCAGGTTCCCGTTCTTGCCGATGCCCATGTTCTGGGACACAGTGA 228475
Query 4508 CAATGCAGTTTAGTGCTTGAACCAT 4532
||||||||||| | |||||||
Sbjct 228474 TGATGCAGTTTAGGGGACGAACCAT 228450
>seq20023
Length=480071
Score = 273 bits (302), Expect = 2e-68
Identities = 320/431 (74%), Gaps = 6/431 (1%)
Strand=Plus/Plus
Query 3979 TTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAACA 4038
|| || | ||||||||||||| ||||||| |||||| || || | ||||| |||||
Sbjct 17651 TTTTCTTTTACTTCAAATTTGCACTTAATGACTTTCTCCTCCTGGA---TAGAAGGAACA 17707
Query 4039 CTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCA 4098
| |||||||||| | |||||| || || || | |||| |||| ||||||| | |||
Sbjct 17708 CCTGGATATTCTGGGAGAAGTTTATAATTTTCCAAATCATTTTCTAGAAAAAATGCATCA 17767
Query 4099 CATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATA 4158
| |||||| |||||||| || | | |||||| | | |||||| || ||| | |||
Sbjct 17768 CTTTCAAATTCTTGCATAATTATTGCCACAAATAATCTAAGATGGCCTGGCTTGTTCAAG 17827
Query 4159 GCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAAT 4218
|||| ||| | |||||| | ||| ||| || ||||| |||| |||||||| ||||
Sbjct 17828 TCTTCCTTA---ATAGAACTGCTTCCTGCTATTCAAACCATATCTAGTTTATTTGTTAAT 17884
Query 4219 TCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTA 4278
|||| || || ||| || |||||||||||| | ||| || || | |||||||||||
Sbjct 17885 GCTGGTTGCACGATAATTTCTAAAGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCC 17944
Query 4279 TGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGG 4338
|| ||| | ||||| ||||| | |||||| | ||||||||| ||||||||| |
Sbjct 17945 TGGGGAGGTTCCTTGAGTTCTCTATTGAGAATTATATTAATTCTATCTTTTAAAGATTGA 18004
Query 4339 TTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398
||||| || ||| | |||||| |||| ||||||||||||| |||||||||||||||
Sbjct 18005 TTCTTTTCTGGAGTGTTGAACCACCTCTTCCTACCCATAATCACCAAATTCTGTTTATCT 18064
Query 4399 GGTACAGAAGA 4409
||| || ||
Sbjct 18065 TCTACTGACGA 18075
>seq40223
Length=1939415
Score = 219 bits (242), Expect = 3e-52
Identities = 195/244 (80%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027
|||||| ||||| |||||| ||||||||||||||||||| | ||| || || || ||||
Sbjct 1826287 ATTAATTGTTCTTTTCATATGCTTCAAATTTGTACTTAATGCCTTTTTCGTCCTGGACAT 1826228
Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087
|||| |||||| |||||||||| | |||||| || || || | ||||| ||||||||
Sbjct 1826227 CAGAAGGAACACCTGGATATTCTGGGAGAAGTTTATACTTTTCCAAATCAATTTCTGGAA 1826168
Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147
|||| || |||| ||||| || ||||||||||| |||||||| ||| |||||| || ||
Sbjct 1826167 AAAATGTATCACTTTCAAGTTCCTGCATGATCCTTGTCACAAATAGTCTAAGATGGCCTG 1826108
Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207
| | | || | ||| || | |||||||| ||||| | |||||| |||||||||||||
Sbjct 1826107 GCTTGTTTATGGATTCCTTGCAGACAGAACTTCCTCCCACTATCCAAACCATGTCTACTT 1826048
Query 4208 TATT 4211
||||
Sbjct 1826047 TATT 1826044
>seq23781
Length=1882226
Score = 208 bits (230), Expect = 5e-49
Identities = 492/738 (67%), Gaps = 4/738 (1%)
Strand=Plus/Minus
Query 101534 TAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATAT-AATGTC 101592
|| |||||||| | ||||||||| | ||||| || || ||| ||| ||| | || |||
Sbjct 25570 TAGACAGCCATTTCCATTTTAATAGTCGGGTGAGGATTGTAGCCTTC-AATCTGAAAGTC 25512
Query 101593 ATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGG 101652
|| || || |||||||| || ||| |||| | | | | || | || || ||
Sbjct 25511 TTCAGCCTTGAAGTCATCGATTGTCTCAACTTTTCAAAGGATTTTGAGCTTGGGGAAAGG 25452
Query 101653 TCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGC 101712
|| || |||| | ||| | || || | || ||||||| | || ||||| ||
Sbjct 25451 CCTTGGTTCTCGCTGAAGCTGAGTCTTCAGTGGCTCGATGTGATTCAGGTAAATGTGTGC 25392
Query 101713 ATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCA 101772
|||||| | ||| || | || || || ||| || | |||| || || |||||| |
Sbjct 25391 ATCTCCCAGAGTGTGTACGAAGTCACCTGGCTTCAGGTCCGTGATGTGTGCGATCATGTA 25332
Query 101773 AGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCT 101832
|| | || | ||||| ||||| || || ||||| || | ||||| || | || ||
Sbjct 25331 GGTGAGCAGGGCGTAGCTGGCAATATTGAAGGGCACACCCAGGCCCATGTCTCCCGACCT 25272
Query 101833 TTGATACAGTTGACAGGAAAGCTTTCCAT-CACAGACATAAAATTGACTTAATACATGAC 101891
||| |||| || ||||| |||| |||| ||| || || || || | | | || |
Sbjct 25271 TTGGTACAACTGGCAGGACAGCTCCCCATTCACC-ACGTAGAACTGGCAGAGGGCGTGGC 25213
Query 101892 AAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTC 101951
| || || | |||| ||| | ||| |||||||||||||| | || ||||
Sbjct 25212 ATGGGGGGAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAGGATGATTCTTC 25153
Query 101952 TATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTC 102011
| | ||||||| ||||| || || || |||| | || | ||| || ||||||| |
Sbjct 25152 TGTTGTTAGGGTTGGTTTTGATTGTGTCGATCACTTTTTGCAGTTGATCTACTCCTTGAC 25093
Query 102012 CTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCAT 102071
|| |||||| | | | |||| ||||| || || |||||||||||||| || ||||
Sbjct 25092 CTGAATAATCTGAATCCATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCAT 25033
Query 102072 ACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATC 102131
| || || || | ||| |||||| |||| | | || || | ||| || || ||
Sbjct 25032 AAACCGGGCCCAAATCCCCTTCAGCTCTATTGGAGAAGCCCAAGCCATCCAAGAAGTCTC 24973
Query 102132 TAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAG 102191
|| || || ||||||||||| | ||| || | || || || || || || |
Sbjct 24972 GGGACCCGTTGGCATCCCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGG 24913
Query 102192 ATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAG 102251
|||| |||||||||||| || || || | ||||||| |||| || || | || || |
Sbjct 24912 ATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCTTTCCAGAAAACACGTTTGGTTG 24853
Query 102252 TTAAAAGTGGAAATTCAT 102269
| | || ||||||||||
Sbjct 24852 TCAGCAGAGGAAATTCAT 24835
>seq70328
Length=3713410
Score = 168 bits (186), Expect = 5e-37
Identities = 185/246 (75%), Gaps = 0/246 (0%)
Strand=Plus/Minus
Query 26927 AGATAGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCAC 26986
||| |||| ||| | |||| | | |||||||| || || || |||||||| || | |||
Sbjct 3676707 AGAAAGCTCTTAAGCCACATGGCGGACAATGGGGGTGACACAGGTGCAGCCCACGGCCAC 3676648
Query 26987 TAGCATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAG 27046
||||||||||| |||| || || | ||||||| | ||| | | | || | || ||
Sbjct 3676647 CAGCATCTTCTCCAGCCGGAAGGAGTGAGGGCAGTGCTGAGACTCCCTTCGAAGGACCAG 3676588
Query 27047 AATCTCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAAC 27106
|||||||| ||||| | ||| ||||||||||| | ||| || ||||| |||||||| |
Sbjct 3676587 GATCTCTTGCTGGATGGTGACAGAGTTCATGTGATGGTCCACCTTCCCTTCAGCATTGAT 3676528
Query 27107 ACATCCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTC 27166
||| ||| ||| || ||||| || ||||| ||||||||||| || || || | || ||
Sbjct 3676527 ACAGCCTGAGTGGCTGCACTTGGCCTCCCAGATCACAGAGGGGTACCTCTCAGGGTCCTC 3676468
Query 27167 ATTGCG 27172
||||||
Sbjct 3676467 ATTGCG 3676462
>seq43829
Length=3831609
Score = 123 bits (136), Expect = 2e-23
Identities = 103/126 (82%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224
||||| |||||||| ||||| | |||||| ||||||||||||||||||| |||||||||
Sbjct 2663194 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTTTATTTGTTAATTCTGGA 2663253
Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284
| ||| |||||| ||| |||||||| | ||| || || | ||||||||||| | ||||
Sbjct 2663254 TCTTCAATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTTTGGA 2663313
Query 4285 AGCTCC 4290
| |||
Sbjct 2663314 GGTTCC 2663319
Score = 120 bits (132), Expect = 2e-22
Identities = 92/109 (84%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| ||||| | |||||||| | |||||||||| | |||||||| || |||||||| ||
Sbjct 2667315 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 2667374
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398
||| |||||||| ||||| ||||||||||||| |||||||||||| ||
Sbjct 2667375 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 2667423
Score = 98.7 bits (108), Expect = 7e-16
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115
|||||| ||||| || | ||||| |||||| ||||| |||| |||||| ||||||||
Sbjct 2660813 AAGTTTATATTTTTCAAAATCAATTTCTGGGAAAAACACATCACTTTCAAATTCTTGCAT 2660872
Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175
|||||| |||||||| ||| |||||| || ||| | |||| ||||| || | | |||
Sbjct 2660873 GATCCTTGTCACAAATAGTCTAAGATGGCCTGGCTTGTTCATGGCTTCCTTTGAAATAGA 2660932
Query 4176 AC 4177
||
Sbjct 2660933 AC 2660934
Score = 82.4 bits (90), Expect = 6e-11
Identities = 66/80 (83%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027
|||||| ||||| |||||||||||||||||||||||||| | ||| || || || ||||
Sbjct 2657005 ATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGACAT 2657064
Query 4028 TAGAAAGAACACTTGGATAT 4047
|| |||||| |||||||
Sbjct 2657065 CCAAAGGAACACCTGGATAT 2657084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 360910779447320
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