Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq70150 500 6e-137 seq20023 273 2e-68 seq40223 219 3e-52 seq23781 208 5e-49 seq70328 168 5e-37 seq43829 123 2e-23 >seq70150 Length=2088832 Score = 500 bits (554), Expect = 6e-137 Identities = 450/565 (80%), Gaps = 0/565 (0%) Strand=Plus/Minus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||| ||||||||||||| | ||| || || || |||| Sbjct 229014 ATTAATTGTTCTTTTCATATACTTCAGATTTGTACTTAATGCCTTTTTCCTCCTGGACAT 228955 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 || |||||| |||||||||| | |||||| ||||| || | ||||| |||||| | Sbjct 228954 CCAAAGGAACACCTGGATATTCTGGAAGAAGTTTATATTTTTCAAAATCAATTTCTGGGA 228895 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 |||| |||| |||||| |||||||||||||| |||||||| ||| |||||| || || Sbjct 228894 AAAACACATCACTTTCAAATTCTTGCATGATCCTTGTCACAAATAGTCTAAGATGGCCTG 228835 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | |||| ||||| ||||| |||||||| ||||| | |||||| ||||||||||||| Sbjct 228834 GCTTGTTCATGGCTTCCTTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTT 228775 Query 4208 TATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAA 4267 |||||| ||||||||| | ||| ||||||| ||| |||||||| ||||| || || | || Sbjct 228774 TATTTGTTAATTCTGGATCTTCAGTAAGTTCTAAGGCATCATCCAAACTTTTGGCAAGAA 228715 Query 4268 AATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTT 4327 ||||||||| | |||| | ||||| ||||| | |||||||| | |||||||||| | Sbjct 228714 AATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCA 228655 Query 4328 TTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAAT 4387 ||||||| || |||||||| ||||| |||||||| ||||| ||||||||||||| |||| Sbjct 228654 TTAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAAT 228595 Query 4388 TCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCA 4447 |||||||| || | | ||||| | ||||||||||||||||||| || || |||||| Sbjct 228594 TCTGTTTAGCTTCTTCTGAAGAGATTGTAGTCATTCTTTGGAAATACTTGAATTCATTCC 228535 Query 4448 TAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCAA 4507 | ||| |||||| |||| ||| || | ||||| ||||||||||| || | |||| | Sbjct 228534 TGAGTGGTGGCCAGGGCAGGTTCCCGTTCTTGCCGATGCCCATGTTCTGGGACACAGTGA 228475 Query 4508 CAATGCAGTTTAGTGCTTGAACCAT 4532 ||||||||||| | ||||||| Sbjct 228474 TGATGCAGTTTAGGGGACGAACCAT 228450 >seq20023 Length=480071 Score = 273 bits (302), Expect = 2e-68 Identities = 320/431 (74%), Gaps = 6/431 (1%) Strand=Plus/Plus Query 3979 TTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAACA 4038 || || | ||||||||||||| ||||||| |||||| || || | ||||| ||||| Sbjct 17651 TTTTCTTTTACTTCAAATTTGCACTTAATGACTTTCTCCTCCTGGA---TAGAAGGAACA 17707 Query 4039 CTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCA 4098 | |||||||||| | |||||| || || || | |||| |||| ||||||| | ||| Sbjct 17708 CCTGGATATTCTGGGAGAAGTTTATAATTTTCCAAATCATTTTCTAGAAAAAATGCATCA 17767 Query 4099 CATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATA 4158 | |||||| |||||||| || | | |||||| | | |||||| || ||| | ||| Sbjct 17768 CTTTCAAATTCTTGCATAATTATTGCCACAAATAATCTAAGATGGCCTGGCTTGTTCAAG 17827 Query 4159 GCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAAT 4218 |||| ||| | |||||| | ||| ||| || ||||| |||| |||||||| |||| Sbjct 17828 TCTTCCTTA---ATAGAACTGCTTCCTGCTATTCAAACCATATCTAGTTTATTTGTTAAT 17884 Query 4219 TCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTA 4278 |||| || || ||| || |||||||||||| | ||| || || | ||||||||||| Sbjct 17885 GCTGGTTGCACGATAATTTCTAAAGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCC 17944 Query 4279 TGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGG 4338 || ||| | ||||| ||||| | |||||| | ||||||||| ||||||||| | Sbjct 17945 TGGGGAGGTTCCTTGAGTTCTCTATTGAGAATTATATTAATTCTATCTTTTAAAGATTGA 18004 Query 4339 TTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||||| || ||| | |||||| |||| ||||||||||||| ||||||||||||||| Sbjct 18005 TTCTTTTCTGGAGTGTTGAACCACCTCTTCCTACCCATAATCACCAAATTCTGTTTATCT 18064 Query 4399 GGTACAGAAGA 4409 ||| || || Sbjct 18065 TCTACTGACGA 18075 >seq40223 Length=1939415 Score = 219 bits (242), Expect = 3e-52 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||| ||||||||||||||||||| | ||| || || || |||| Sbjct 1826287 ATTAATTGTTCTTTTCATATGCTTCAAATTTGTACTTAATGCCTTTTTCGTCCTGGACAT 1826228 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 |||| |||||| |||||||||| | |||||| || || || | ||||| |||||||| Sbjct 1826227 CAGAAGGAACACCTGGATATTCTGGGAGAAGTTTATACTTTTCCAAATCAATTTCTGGAA 1826168 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 |||| || |||| ||||| || ||||||||||| |||||||| ||| |||||| || || Sbjct 1826167 AAAATGTATCACTTTCAAGTTCCTGCATGATCCTTGTCACAAATAGTCTAAGATGGCCTG 1826108 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | | || | ||| || | |||||||| ||||| | |||||| ||||||||||||| Sbjct 1826107 GCTTGTTTATGGATTCCTTGCAGACAGAACTTCCTCCCACTATCCAAACCATGTCTACTT 1826048 Query 4208 TATT 4211 |||| Sbjct 1826047 TATT 1826044 >seq23781 Length=1882226 Score = 208 bits (230), Expect = 5e-49 Identities = 492/738 (67%), Gaps = 4/738 (1%) Strand=Plus/Minus Query 101534 TAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATAT-AATGTC 101592 || |||||||| | ||||||||| | ||||| || || ||| ||| ||| | || ||| Sbjct 25570 TAGACAGCCATTTCCATTTTAATAGTCGGGTGAGGATTGTAGCCTTC-AATCTGAAAGTC 25512 Query 101593 ATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGG 101652 || || || |||||||| || ||| |||| | | | | || | || || || Sbjct 25511 TTCAGCCTTGAAGTCATCGATTGTCTCAACTTTTCAAAGGATTTTGAGCTTGGGGAAAGG 25452 Query 101653 TCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGC 101712 || || |||| | ||| | || || | || ||||||| | || ||||| || Sbjct 25451 CCTTGGTTCTCGCTGAAGCTGAGTCTTCAGTGGCTCGATGTGATTCAGGTAAATGTGTGC 25392 Query 101713 ATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCA 101772 |||||| | ||| || | || || || ||| || | |||| || || |||||| | Sbjct 25391 ATCTCCCAGAGTGTGTACGAAGTCACCTGGCTTCAGGTCCGTGATGTGTGCGATCATGTA 25332 Query 101773 AGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCT 101832 || | || | ||||| ||||| || || ||||| || | ||||| || | || || Sbjct 25331 GGTGAGCAGGGCGTAGCTGGCAATATTGAAGGGCACACCCAGGCCCATGTCTCCCGACCT 25272 Query 101833 TTGATACAGTTGACAGGAAAGCTTTCCAT-CACAGACATAAAATTGACTTAATACATGAC 101891 ||| |||| || ||||| |||| |||| ||| || || || || | | | || | Sbjct 25271 TTGGTACAACTGGCAGGACAGCTCCCCATTCACC-ACGTAGAACTGGCAGAGGGCGTGGC 25213 Query 101892 AAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTC 101951 | || || | |||| ||| | ||| |||||||||||||| | || |||| Sbjct 25212 ATGGGGGGAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAGGATGATTCTTC 25153 Query 101952 TATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTC 102011 | | ||||||| ||||| || || || |||| | || | ||| || ||||||| | Sbjct 25152 TGTTGTTAGGGTTGGTTTTGATTGTGTCGATCACTTTTTGCAGTTGATCTACTCCTTGAC 25093 Query 102012 CTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCAT 102071 || |||||| | | | |||| ||||| || || |||||||||||||| || |||| Sbjct 25092 CTGAATAATCTGAATCCATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCAT 25033 Query 102072 ACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATC 102131 | || || || | ||| |||||| |||| | | || || | ||| || || || Sbjct 25032 AAACCGGGCCCAAATCCCCTTCAGCTCTATTGGAGAAGCCCAAGCCATCCAAGAAGTCTC 24973 Query 102132 TAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAG 102191 || || || ||||||||||| | ||| || | || || || || || || | Sbjct 24972 GGGACCCGTTGGCATCCCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGG 24913 Query 102192 ATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAG 102251 |||| |||||||||||| || || || | ||||||| |||| || || | || || | Sbjct 24912 ATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCTTTCCAGAAAACACGTTTGGTTG 24853 Query 102252 TTAAAAGTGGAAATTCAT 102269 | | || |||||||||| Sbjct 24852 TCAGCAGAGGAAATTCAT 24835 >seq70328 Length=3713410 Score = 168 bits (186), Expect = 5e-37 Identities = 185/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 26927 AGATAGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCAC 26986 ||| |||| ||| | |||| | | |||||||| || || || |||||||| || | ||| Sbjct 3676707 AGAAAGCTCTTAAGCCACATGGCGGACAATGGGGGTGACACAGGTGCAGCCCACGGCCAC 3676648 Query 26987 TAGCATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAG 27046 ||||||||||| |||| || || | ||||||| | ||| | | | || | || || Sbjct 3676647 CAGCATCTTCTCCAGCCGGAAGGAGTGAGGGCAGTGCTGAGACTCCCTTCGAAGGACCAG 3676588 Query 27047 AATCTCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAAC 27106 |||||||| ||||| | ||| ||||||||||| | ||| || ||||| |||||||| | Sbjct 3676587 GATCTCTTGCTGGATGGTGACAGAGTTCATGTGATGGTCCACCTTCCCTTCAGCATTGAT 3676528 Query 27107 ACATCCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTC 27166 ||| ||| ||| || ||||| || ||||| ||||||||||| || || || | || || Sbjct 3676527 ACAGCCTGAGTGGCTGCACTTGGCCTCCCAGATCACAGAGGGGTACCTCTCAGGGTCCTC 3676468 Query 27167 ATTGCG 27172 |||||| Sbjct 3676467 ATTGCG 3676462 >seq43829 Length=3831609 Score = 123 bits (136), Expect = 2e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| ||||||||||||||||||| ||||||||| Sbjct 2663194 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTTTATTTGTTAATTCTGGA 2663253 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 | ||| |||||| ||| |||||||| | ||| || || | ||||||||||| | |||| Sbjct 2663254 TCTTCAATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTTTGGA 2663313 Query 4285 AGCTCC 4290 | ||| Sbjct 2663314 GGTTCC 2663319 Score = 120 bits (132), Expect = 2e-22 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || |||||||| || Sbjct 2667315 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 2667374 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| ||||||||||||| |||||||||||| || Sbjct 2667375 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 2667423 Score = 98.7 bits (108), Expect = 7e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||| || | ||||| |||||| ||||| |||| |||||| |||||||| Sbjct 2660813 AAGTTTATATTTTTCAAAATCAATTTCTGGGAAAAACACATCACTTTCAAATTCTTGCAT 2660872 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||| ||| |||||| || ||| | |||| ||||| || | | ||| Sbjct 2660873 GATCCTTGTCACAAATAGTCTAAGATGGCCTGGCTTGTTCATGGCTTCCTTTGAAATAGA 2660932 Query 4176 AC 4177 || Sbjct 2660933 AC 2660934 Score = 82.4 bits (90), Expect = 6e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||||||||||||||||| | ||| || || || |||| Sbjct 2657005 ATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGACAT 2657064 Query 4028 TAGAAAGAACACTTGGATAT 4047 || |||||| ||||||| Sbjct 2657065 CCAAAGGAACACCTGGATAT 2657084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360910779447320