Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq36501 140 4e-28
seq29163 123 3e-23
seq26065 102 1e-16
seq65209 100 3e-16
seq6493 87.8 2e-12
>seq36501
Length=2370580
Score = 140 bits (154), Expect = 4e-28
Identities = 113/137 (82%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209
|| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |
Sbjct 2290869 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 2290810
Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269
||||||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||
Sbjct 2290809 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 2290750
Query 53270 CTATTTCTAAGACCGTA 53286
|| ||||| | ||| ||
Sbjct 2290749 CTGTTTCTTATACCATA 2290733
Score = 102 bits (112), Expect = 1e-16
Identities = 122/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827
|||| |||| ||| || ||||||||||| | || || ||||| || || || || || |
Sbjct 2267071 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 2267012
Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887
|||||||||| || || | ||||| | || || ||| | || || | || ||| ||||
Sbjct 2267011 TGGCATAATCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 2266952
Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933
||| || || || || ||| | |||| |||||||| || |||||
Sbjct 2266951 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 2266906
Score = 95.1 bits (104), Expect = 1e-14
Identities = 135/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447
|||| || || ||||| || | || || || || ||||| || || || || || || |
Sbjct 2286200 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 2286141
Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507
||||||||||||| ||||||| |||||| | || || || | || ||||| || |
Sbjct 2286140 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 2286081
Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567
| | | |||||||| || ||||| | ||||| || ||||| || || || | ||| |
Sbjct 2286080 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGCACCCCAATTCCAATGGGGCGATGGC 2286021
Query 53568 TCTTATTAGA 53577
||||| ||
Sbjct 2286020 GTTTATTCGA 2286011
>seq29163
Length=2664742
Score = 123 bits (136), Expect = 3e-23
Identities = 100/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||||||||| ||||| | ||| |||||||||||||| || ||||| || || || || |
Sbjct 301517 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 301458
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| ||||| ||||| |||||||| || || |||||||| || ||||| ||||| |||||||
Sbjct 301457 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 301398
Query 24277 C 24277
|
Sbjct 301397 C 301397
Score = 114 bits (126), Expect = 2e-20
Identities = 89/106 (84%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454
|||||||| || || ||||| | |||||||||||||| ||||| |||||||| |||||
Sbjct 299832 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 299773
Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500
||||| || || |||||||| | ||||||||||||||| ||||||
Sbjct 299772 AATTTGGAAGCCATAGAAACAACGAGCCTCGGTAATCTGAACTTCT 299727
>seq26065
Length=1373002
Score = 102 bits (112), Expect = 1e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218
|| ||||| || || | || |||||||| |||||||| ||||| || || | || ||
Sbjct 1017726 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 1017667
Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277
||||| ||||| | ||||| ||||| || ||||||||||||||||| || ||||||||
Sbjct 1017666 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 1017608
>seq65209
Length=3338390
Score = 100 bits (110), Expect = 3e-16
Identities = 152/216 (70%), Gaps = 3/216 (1%)
Strand=Plus/Plus
Query 21922 ATCTAGAGATTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGC 21981
||||| | ||| ||||| | | |||||| ||| |||| |||| | | || |||| ||
Sbjct 2239533 ATCTAAAATTTGAACTTCCTCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTATGC 2239592
Query 21982 TATTCTATCCCCCGTATTTACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCC 22041
||| ||| ||| | || || | ||| | | ||| ||| ||||| || | || ||
Sbjct 2239593 AGTTCGATCACCCTTTTTGACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACC 2239652
Query 22042 TATATTTCCCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAG 22098
| |||||| ||||||||||| ||||| ||||| |||||| ||| || | ||||
Sbjct 2239653 AACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGC 2239712
Query 22099 GGACAGACCAGACCTAGGAGCTATTCTACCATAGCA 22134
| || ||||| | |||||| | ||| ||||||||
Sbjct 2239713 TGCCAAGCCAGAACGAGGAGCCACTCTTCCATAGCA 2239748
>seq6493
Length=163338
Score = 87.8 bits (96), Expect = 2e-12
Identities = 175/257 (68%), Gaps = 7/257 (3%)
Strand=Plus/Plus
Query 21883 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 21940
||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| |||||
Sbjct 143063 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTC--ATCTAAAATTTGAACTTCC 143120
Query 21941 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 22000
| | |||||| ||| |||| | || | | || ||||| || |||| ||| ||| | ||
Sbjct 143121 TCTATTTCTGGGTAAAATATCCATTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 143180
Query 22001 ACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 22060
|| | ||| | | ||| ||| ||||| || | || || | |||| | |||||||||
Sbjct 143181 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTACTCTATAATCT 143240
Query 22061 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 22117
|| ||||| ||||| || ||| ||| || | |||| | || | ||| | ||||
Sbjct 143241 TCATCTATGACACCAGCTTCTACATCTATGAAGTGTTTTGTTGCCAAGCTAGAACGAGGA 143300
Query 22118 GCTATTCTACCATAGCA 22134
|| ||| ||||||||
Sbjct 143301 GCCGCTCTTCCATAGCA 143317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593147768073600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |