Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq40474 277 2e-69 seq55204 118 1e-21 seq69375 104 3e-17 seq38330 89.7 6e-13 >seq40474 Length=2148920 Score = 277 bits (306), Expect = 2e-69 Identities = 264/338 (78%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||| || ||||| ||||| | | | | |||| | ||||| |||||||||||||| Sbjct 1833508 AGCAGGGTTTCAATGTCAGGCTCGATGTCGATGGTCAGAAAGCGGCGGCTGTACCTGCGC 1833449 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| ||||| | ||||||| |||||||||||||||||||| |||||||||||| Sbjct 1833448 ACGGGCACACCGTCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTGCGG 1833389 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| || ||||| | |||| || |||||| ||| ||| | | |||||| || Sbjct 1833388 CACACCGGGGACCACGTGATGAACTTAGGGTCGGTCATGAGAGCAGTGGCGTCGTCACTT 1833329 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||| ||||| | ||| || |||||||||||||||||||| ||| | | || || ||| Sbjct 1833328 GGCGTGGGCAGAGTCTCCCGAAGGAAGGCGAAGAGCGGATGCGCCTTCTCGCCATTCACC 1833269 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||| ||||||||||| || || |||||||| || || || ||||||| |||| Sbjct 1833268 TCGCACTTTTCGAAGAGCATGAAATTGGGCTCGAACCCACCGCCCGGTCGGACGTACTTC 1833209 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 ||| || || |||||| | |||| |||||||||||| Sbjct 1833208 AGGCAATTCAGGATCTCCTCGTTCTTGGCGTTTTCCTG 1833171 Score = 163 bits (180), Expect = 3e-35 Identities = 161/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || || || ||||| ||||| | ||| |||| Sbjct 1832913 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGTACGACCAGGCCCCGGGGTCCGAGGC 1832854 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||| || |||||||| ||||| ||||| ||||| | |||||||| ||||||| Sbjct 1832853 GCCGCTGCAGGTCATTCATCTGGGTGTAGTCCCGCACCGTTGTGCCTCAGAGCGACGCTA 1832794 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 ||||||| ||||||| ||| |||||| | | || | | | | || || || |||| Sbjct 1832793 CGTTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGGCCAGGTGGAAGGGCTCCCCGCCGG 1832734 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | || || || |||||||||||||| Sbjct 1832733 CCAGAGGACGCGCGGAGAAGGCGTACAC 1832706 >seq55204 Length=3538205 Score = 118 bits (130), Expect = 1e-21 Identities = 205/288 (71%), Gaps = 9/288 (3%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| |||||| || || ||| Sbjct 3469335 GCAGCTGCGCAGCATCTACGAGAGCA-GCTTGTCCATCGGCAACTTTGCCTCTCGCCTGC 3469277 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || ||||||||||| || ||| | ||||||| Sbjct 3469276 TGGTGCACCTGTTCCCGGAGCTCTTCACCCAGGAGAACCTGCGCAAGCAGTACAACTGCA 3469217 Query 50529 ACGGCTCCATGGGCAAG-CGCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| ||| ||| |||||| || | | |||| |||||| Sbjct 3469216 GCGGCTCCCTGGGCAAGAAGCA-GCTGGACCCGTCCCGTATCAAGCTCATCCGCCACTAT 3469158 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCAC-AAAGTTCCTGGC 50646 |||||| |||| |||| ||| || || || || |||| ||| ||||| ||| Sbjct 3469157 GTGCAGCTGCTCTACCCACGGGCTAAGAATGACCGTGTCTGGA-CACTGGAGTTCGTGGG 3469099 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 || |||||||||||||||||||| | |||||| || |||||| Sbjct 3469098 CAAACTCGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 3469053 >seq69375 Length=862040 Score = 104 bits (114), Expect = 3e-17 Identities = 202/288 (70%), Gaps = 9/288 (3%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| |||||| || ||| ||| Sbjct 665978 GCAGCTGCGCAGCATCTACGAGAGCA-GCTTGTCCATCGGCAACTTTGCCTCGCGCCTGC 665920 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || ||||||||||| || ||| | ||||||| Sbjct 665919 TGGTGCACCTGTTCCCGGAGCTCTTCACCCAGGAGAACCTGCGCAAGCAGTACAACTGCA 665860 Query 50529 ACGGCTCCATGGGCAAG-CGCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| ||| ||| |||||| || | | || | |||||| Sbjct 665859 GCGGCTCCCTGGGCAAGAAGCA-GCTGGACCCGTCCCGTATCAAGCTCATCTGCCACTAT 665801 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCAC-AAAGTTCCTGGC 50646 |||||| |||| |||| ||| || || || || |||| ||| ||||| ||| Sbjct 665800 GTGCAGCTGCTCTACCCACGGGCTAAGAATGACCGTGTCTGGA-CACTGGAGTTCGTGGG 665742 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 || |||||||||| ||| ||| | | |||||| || |||||| Sbjct 665741 CAAACTTGACGAGCGCTACCGCCGC--CAGGACACGGAGCAGAGGCGC 665696 >seq38330 Length=3569583 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/221 (69%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 83053 GGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCT 83112 ||| ||| ||| || | |||| ||| | | ||||| | | ||||| |||||||||| Sbjct 2660551 GGGAAGCCCGGCTTCTGTATCGGACTCAATGTCCAGGATTAGAAAGCGGCGGCTGTACCT 2660610 Query 83113 GCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTT-CTCGAAGTTCCAGGCCACGTCGT 83171 || ||||||| ||||| | ||||||| || ||| || |||| || ||| | ||| Sbjct 2660611 GCCCACGGGCCCACCGTCTGGGCCCACCAGGAGCTTCCTGGAAGCTCTGGGCGAAGTCCC 2660670 Query 83172 TGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGT 83231 |||||||||| || |||||| |||| | |||||| || ||| | | | ||| Sbjct 2660671 TGCGGCACACCAGACACCAGGGGATGAACCTGGGGTCTTTCCCGAAGGCCGTGGAGACGT 2660730 Query 83232 CGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGC 83272 | || ||| |||||||||| | ||| || |||||| Sbjct 2660731 CACTGGGCATGCGCAGGGCCTCGCCAAGGCCTGCAAAGAGC 2660771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608208397892800