Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq40474 277 2e-69
seq55204 118 1e-21
seq69375 104 3e-17
seq38330 89.7 6e-13
>seq40474
Length=2148920
Score = 277 bits (306), Expect = 2e-69
Identities = 264/338 (78%), Gaps = 0/338 (0%)
Strand=Plus/Minus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
||||||| || ||||| ||||| | | | | |||| | ||||| ||||||||||||||
Sbjct 1833508 AGCAGGGTTTCAATGTCAGGCTCGATGTCGATGGTCAGAAAGCGGCGGCTGTACCTGCGC 1833449
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|||||| ||||| | ||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1833448 ACGGGCACACCGTCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTGCGG 1833389
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
||||| || ||||| | |||| || |||||| ||| ||| | | |||||| ||
Sbjct 1833388 CACACCGGGGACCACGTGATGAACTTAGGGTCGGTCATGAGAGCAGTGGCGTCGTCACTT 1833329
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
|||| ||||| | ||| || |||||||||||||||||||| ||| | | || || |||
Sbjct 1833328 GGCGTGGGCAGAGTCTCCCGAAGGAAGGCGAAGAGCGGATGCGCCTTCTCGCCATTCACC 1833269
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
|||||||| ||||||||||| || || |||||||| || || || ||||||| ||||
Sbjct 1833268 TCGCACTTTTCGAAGAGCATGAAATTGGGCTCGAACCCACCGCCCGGTCGGACGTACTTC 1833209
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394
||| || || |||||| | |||| ||||||||||||
Sbjct 1833208 AGGCAATTCAGGATCTCCTCGTTCTTGGCGTTTTCCTG 1833171
Score = 163 bits (180), Expect = 3e-35
Identities = 161/208 (77%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||| || || |||||||| |||||||| || || || ||||| ||||| | ||| ||||
Sbjct 1832913 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGTACGACCAGGCCCCGGGGTCCGAGGC 1832854
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510
|||||||||| || |||||||| ||||| ||||| ||||| | |||||||| |||||||
Sbjct 1832853 GCCGCTGCAGGTCATTCATCTGGGTGTAGTCCCGCACCGTTGTGCCTCAGAGCGACGCTA 1832794
Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570
||||||| ||||||| ||| |||||| | | || | | | | || || || ||||
Sbjct 1832793 CGTTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGGCCAGGTGGAAGGGCTCCCCGCCGG 1832734
Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598
| || || || ||||||||||||||
Sbjct 1832733 CCAGAGGACGCGCGGAGAAGGCGTACAC 1832706
>seq55204
Length=3538205
Score = 118 bits (130), Expect = 1e-21
Identities = 205/288 (71%), Gaps = 9/288 (3%)
Strand=Plus/Minus
Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468
||| ||||||| || |||| | ||| || ||| ||| |||||| || || |||
Sbjct 3469335 GCAGCTGCGCAGCATCTACGAGAGCA-GCTTGTCCATCGGCAACTTTGCCTCTCGCCTGC 3469277
Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528
| ||| || |||| || |||||||| || ||||||||||| || ||| | |||||||
Sbjct 3469276 TGGTGCACCTGTTCCCGGAGCTCTTCACCCAGGAGAACCTGCGCAAGCAGTACAACTGCA 3469217
Query 50529 ACGGCTCCATGGGCAAG-CGCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587
||||||| |||||||| ||| ||| |||||| || | | |||| ||||||
Sbjct 3469216 GCGGCTCCCTGGGCAAGAAGCA-GCTGGACCCGTCCCGTATCAAGCTCATCCGCCACTAT 3469158
Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCAC-AAAGTTCCTGGC 50646
|||||| |||| |||| ||| || || || || |||| ||| ||||| |||
Sbjct 3469157 GTGCAGCTGCTCTACCCACGGGCTAAGAATGACCGTGTCTGGA-CACTGGAGTTCGTGGG 3469099
Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693
|| |||||||||||||||||||| | |||||| || ||||||
Sbjct 3469098 CAAACTCGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 3469053
>seq69375
Length=862040
Score = 104 bits (114), Expect = 3e-17
Identities = 202/288 (70%), Gaps = 9/288 (3%)
Strand=Plus/Minus
Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468
||| ||||||| || |||| | ||| || ||| ||| |||||| || ||| |||
Sbjct 665978 GCAGCTGCGCAGCATCTACGAGAGCA-GCTTGTCCATCGGCAACTTTGCCTCGCGCCTGC 665920
Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528
| ||| || |||| || |||||||| || ||||||||||| || ||| | |||||||
Sbjct 665919 TGGTGCACCTGTTCCCGGAGCTCTTCACCCAGGAGAACCTGCGCAAGCAGTACAACTGCA 665860
Query 50529 ACGGCTCCATGGGCAAG-CGCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587
||||||| |||||||| ||| ||| |||||| || | | || | ||||||
Sbjct 665859 GCGGCTCCCTGGGCAAGAAGCA-GCTGGACCCGTCCCGTATCAAGCTCATCTGCCACTAT 665801
Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCAC-AAAGTTCCTGGC 50646
|||||| |||| |||| ||| || || || || |||| ||| ||||| |||
Sbjct 665800 GTGCAGCTGCTCTACCCACGGGCTAAGAATGACCGTGTCTGGA-CACTGGAGTTCGTGGG 665742
Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693
|| |||||||||| ||| ||| | | |||||| || ||||||
Sbjct 665741 CAAACTTGACGAGCGCTACCGCCGC--CAGGACACGGAGCAGAGGCGC 665696
>seq38330
Length=3569583
Score = 89.7 bits (98), Expect = 6e-13
Identities = 153/221 (69%), Gaps = 1/221 (0%)
Strand=Plus/Plus
Query 83053 GGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCT 83112
||| ||| ||| || | |||| ||| | | ||||| | | ||||| ||||||||||
Sbjct 2660551 GGGAAGCCCGGCTTCTGTATCGGACTCAATGTCCAGGATTAGAAAGCGGCGGCTGTACCT 2660610
Query 83113 GCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTT-CTCGAAGTTCCAGGCCACGTCGT 83171
|| ||||||| ||||| | ||||||| || ||| || |||| || ||| | |||
Sbjct 2660611 GCCCACGGGCCCACCGTCTGGGCCCACCAGGAGCTTCCTGGAAGCTCTGGGCGAAGTCCC 2660670
Query 83172 TGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGT 83231
|||||||||| || |||||| |||| | |||||| || ||| | | | |||
Sbjct 2660671 TGCGGCACACCAGACACCAGGGGATGAACCTGGGGTCTTTCCCGAAGGCCGTGGAGACGT 2660730
Query 83232 CGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGC 83272
| || ||| |||||||||| | ||| || ||||||
Sbjct 2660731 CACTGGGCATGCGCAGGGCCTCGCCAAGGCCTGCAAAGAGC 2660771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608208397892800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |