Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq61258 82.4 6e-11 seq33366 82.4 6e-11 >seq61258 Length=1460494 Score = 82.4 bits (90), Expect = 6e-11 Identities = 85/110 (77%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| |||||||| || || || |||||||| ||| |||| ||||||||| ||||| Sbjct 487561 GATAAGGAAGGTGTTCCTCCTGACCAGCAAAGACTGATCGTTGCTGGCAAACAACTGGAA 487620 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| | || || || | ||||| ||||||||||| || |||||||| Sbjct 487621 GATGG-ATGTCTTTGACCAACTACAACATTCAAAAGGAGTCCACTCTTCA 487669 >seq33366 Length=1752596 Score = 82.4 bits (90), Expect = 6e-11 Identities = 167/247 (68%), Gaps = 1/247 (0%) Strand=Plus/Plus Query 24997 CACAGCAACCGTTGTCATTTATAAGTAATAGTGTAAAAATGCAAATATTCATCAAAACAT 25056 ||||| ||| || | |||| | | |||| || ||||||||||| ||| | ||||| Sbjct 779911 CACAGTAACGTTTTCCTTTTAAACCTTATAG-GTCAAAATGCAAATCTTCGTGAAAACCC 779969 Query 25057 TGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCAGAGACGGTGGCCGATCTCAAGC 25116 |||| ||||| ||||| ||| || ||| ||| || || | | || | ||| Sbjct 779970 TGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTGAAGG 780029 Query 25117 AAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCA 25176 || || ||||| ||||| | ||| || || || || || |||||||| |||| Sbjct 780030 CCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCA 780089 Query 25177 AACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTC 25236 | || |||||||| | ||| | | |||||||| ||||| || || || || || | Sbjct 780090 AGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATTCAGAAAGAGTCGACCCTGC 780149 Query 25237 ACATGGT 25243 || |||| Sbjct 780150 ACCTGGT 780156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410409690770480