Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq75383 170 2e-37 seq33366 120 3e-22 seq37082 111 2e-19 seq49734 104 2e-17 seq70604 93.3 4e-14 seq34609 84.2 2e-11 seq29163 84.2 2e-11 >seq75383 Length=1910755 Score = 170 bits (188), Expect = 2e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | |||||||| ||||||||| | || || || ||| Sbjct 169918 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 169977 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | |||||||||||||||||| | ||||| Sbjct 169978 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 170036 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || ||||||||||| || | ||||||||| |||||||| Sbjct 170037 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 170096 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| || || ||||||||||||| || Sbjct 170097 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCGCTTGAGGGGAGG 170144 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | |||||||| ||||||||| | || || || ||| Sbjct 169006 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 169065 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | |||||||||||||||||| | ||||| Sbjct 169066 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 169124 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || ||||||||||| || | ||||||||| |||||||| Sbjct 169125 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 169184 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| || || | ||| | || || || Sbjct 169185 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 169232 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | |||||||| ||||||||| | || || || ||| Sbjct 169234 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 169293 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | |||||||||||||||||| | ||||| Sbjct 169294 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 169352 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || ||||||||||| || | ||||||||| |||||||| Sbjct 169353 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 169412 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| || || | ||| | || || || Sbjct 169413 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 169460 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | |||||||| ||||||||| | || || || ||| Sbjct 169462 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 169521 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | |||||||||||||||||| | ||||| Sbjct 169522 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 169580 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || ||||||||||| || | ||||||||| |||||||| Sbjct 169581 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 169640 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| || || | ||| | || || || Sbjct 169641 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 169688 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | |||||||| ||||||||| | || || || ||| Sbjct 169690 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 169749 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | |||||||||||||||||| | ||||| Sbjct 169750 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 169808 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || ||||||||||| || | ||||||||| |||||||| Sbjct 169809 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 169868 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| || || | ||| | || || || Sbjct 169869 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 169916 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || ||||| || ||||| || ||||||||||| | || || || | | Sbjct 168777 AATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGAGCCGAG 168836 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| || || | || ||||| ||||||||| | ||||| Sbjct 168837 TGACACCATCGAGAATGTCAAGGTGAAGATACAAGAAAAAGAAGGCATCCCCCCAGACCA 168896 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || ||||||||||| || | ||||||||| |||||||| Sbjct 168897 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 168956 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||| |||| ||||| || || | ||| | || || || Sbjct 168957 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 169004 >seq33366 Length=1752596 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| ||||| || || ||||| ||||||||| | || || || || Sbjct 779945 AAAATGCAAATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 780004 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| || || | || || || ||||| ||| | ||| Sbjct 780005 AGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGAC 780064 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | ||||||| || ||||| |||||||| || | ||||| || || ||| Sbjct 780065 CAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 780124 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||| ||||| ||| | || ||||| || || | || | ||||| ||| Sbjct 780125 AACATTCAGAAAGAGTCGACCCTGCACCTGGTCCTTCGTCTTAGGGGTGGC 780175 >seq37082 Length=86608 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || | |||||| ||||| ||| | || ||||| ||| Sbjct 35419 ATGCAGATCTTTGTGAAGACCCTGATGGGCAAGACCATTACCCTTGAGGTCGAGCCCAGT 35360 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||| | ||||| | ||| | ||||||||||| | |||||| Sbjct 35359 GACACCATTGAGAGTGTCAGAGCCAAAATCCAAGACGAGGAGGGCATCCCACCAGACCAG 35300 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| | | |||||| ||||||| || | | ||| || |||||||| Sbjct 35299 CAGCGTCTGATCTTCTCCGGCAAAGAGCTGGAGGATGGCCACACTCTGTCAGACTACAAT 35240 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCT 40895 |||||||| ||| |||| |||||||| Sbjct 35239 ATCCAGAAAGAGTCCACCCTGCATCT 35214 >seq49734 Length=293 Score = 104 bits (114), Expect = 2e-17 Identities = 114/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | |||||||||||||||||| |||||||| | || |||| | Sbjct 245 TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCTAGACCAGCAGAGGCTGATCTTTG 186 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | || ||||||||||| || | || |||||| || ||||||||||||| ||| ||| Sbjct 185 CAGGGAAACAGCTGGAAGATGGGCACACCCTGTCTGAATACAACATCCAGA--GAGTCCA 128 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | |||| | || ||||||||||||| || Sbjct 127 CTCTGCTCTTGGTCCTGCGCTTGAGGGGAGG 97 >seq70604 Length=2882449 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || ||||| || |||||||| | || ||| | || Sbjct 1789582 AAGATGCAGATTTTCGTGAAGACCCTAACGGGGAAGACCATCACTCTTGAGGTCCAGCCC 1789523 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | ||| | |||| || || | || || || || || || | ||| Sbjct 1789522 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 1789463 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||| |||| |||| || |||| || ||||| || | || || | |||||| Sbjct 1789462 CAGCAAAGACTGATCTTTGCTGGCAGGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 1789403 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||| || |||||| |||| || |||||||||||| Sbjct 1789402 AACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTG 1789367 >seq34609 Length=2775773 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||| | || || || || || || |||||||| | || ||||| || Sbjct 2545944 AAGATGCAGATTTTCATGAAGACCCTGACAGGGAAGACCATCACTCTTGAGGTCGAGCCC 2545885 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | ||| | |||| || || | || || || || || || | ||| Sbjct 2545884 TCAGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 2545825 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||| |||| |||| | ||||| || ||||| || | || || | |||||| Sbjct 2545824 CAGCAAAGACTGATCTTTGTTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 2545765 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||| || |||||| |||| || ||||||| |||| Sbjct 2545764 AACATTCAAAAGGAGTCCACTCTTCATCTAGCGTTG 2545729 >seq29163 Length=2664742 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| |||||||||| || ||| || | ||||| | Sbjct 301392 TGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCTATATTCT 301451 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 ||||||||||||| || || ||||| ||||| || || ||| || || || ||| | Sbjct 301452 GGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAG 301511 Query 117162 ACGAGG 117167 |||||| Sbjct 301512 ACGAGG 301517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514721240643200