Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq23781 228 6e-55 >seq23781 Length=1882226 Score = 228 bits (252), Expect = 6e-55 Identities = 519/773 (67%), Gaps = 6/773 (1%) Strand=Plus/Minus Query 96898 TAAACAGCCATGGGCATTTTTATGCTAGGGTAAGGGTTATAGTTTTCCAGAATAATGTCA 96957 || |||||||| |||||| || | |||| ||| || ||| ||| | || ||| Sbjct 25570 TAGACAGCCATTTCCATTTTAATAGTCGGGTGAGGATTGTAGCCTTCAATCTGAAAGTCT 25511 Query 96958 TTTGCTTTAAAATCATCAATAGATGCAATCTTTCTGGCAAACTTTAGTGTTGGGAAAGGC 97017 | || || || ||||| || | ||| |||| | || || | ||||||||| Sbjct 25510 TCAGCCTTGAAGTCATCGATTGTCTCAACTTTTCAAAGGATTTTGAGCTTGGGGAAAGGC 25451 Query 97018 CTGGGAGTTCGCGTAAGCTGC-TCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGC 97076 || || |||| |||||| ||| | || | || |||||||||| |||||||| || Sbjct 25450 CTTGGTTCTCGCTGAAGCTGAGTCT-TCAGTGGCTCGATGTGATTCAGGTAAATGTGTGC 25392 Query 97077 ATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACA 97136 |||||| | |||||| | || || || || | || |||| || |||||||| | Sbjct 25391 ATCTCCCAGAGTGTGTACGAAGTCACCTGGCTTCAGGTCCGTGATGTGTGCGATCATGTA 25332 Query 97137 AGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCT 97196 || | || | ||||| ||||| || || ||||| || || ||||| || | || || Sbjct 25331 GGTGAGCAGGGCGTAGCTGGCAATATTGAAGGGCACACCCAGGCCCATGTCTCCCGACCT 25272 Query 97197 TTGATATAACTGACAGGAAAGCTTTCCAT-CACACACATAAAACTGACTCAATACATGAC 97255 ||| || ||||| ||||| |||| |||| ||| ||| || ||||| | | | || | Sbjct 25271 TTGGTACAACTGGCAGGACAGCTCCCCATTCAC-CACGTAGAACTGGCAGAGGGCGTGGC 25213 Query 97256 AGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTC 97315 | ||||| | ||||| || | |||| |||||||||||||| | ||||||| Sbjct 25212 ATGGGGGGAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAGGATGATTCTTC 25153 Query 97316 TATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTC 97375 | | | | ||||| || | || || | || | | | | |||||| || |||| | Sbjct 25152 TGTTGTTAGGGTTGGTTTTGATTGTGTCGATCACTTTTTGCAGTTGATCTACTCCTTGAC 25093 Query 97376 CACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCAT 97435 | ||||| | | | ||| ||||| || |||||||||||||| ||||| |||| Sbjct 25092 CTGAATAATCTGAATCCATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCAT 25033 Query 97436 AAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAA-ACCAAGCTTATCTAAATAGGAC 97494 |||| || || | || ||||| |||||| |||| |||||| ||| || || Sbjct 25032 AAACCGGGCCCAAATCCCCTTCAGCTCTATTGGAGAAGCCCAAGC-CATCCAAGAAGTCT 24974 Query 97495 CTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGTA 97554 | || || || ||||||||||| | ||| || | | || || || || || Sbjct 24973 CGGGACCCGTTGGCATCCCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTG 24914 Query 97555 GATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGTT 97614 ||||| |||||||||||| ||| || |||| ||||||| |||| || || | || ||| Sbjct 24913 GATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCTTTCCAGAAAACACGTTTGGTT 24854 Query 97615 GTTAAGAGAGGAAAATCCTTTTCTAAGCTGTATCTAGACTGCATTCCAAAAAC 97667 || | |||||||| || | | | | |||| | | |||||| || || || Sbjct 24853 GTCAGCAGAGGAAATTCATCTCTCAGGTTGTACCGCGCCTGCATCCCGAACAC 24801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346457212432400