Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq33366 111 1e-19 seq37082 107 2e-18 seq42836 91.5 1e-13 seq64345 84.2 2e-11 >seq33366 Length=1752596 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| |||||||||||||| | |||||| ||| || Sbjct 780156 ACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 780097 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || ||||| ||||| || Sbjct 780096 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 780037 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 780036 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 779977 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| ||||| || || || ||||| Sbjct 779976 CCGGTCAGGGTTTTCACGAAGATTTGCAT 779948 >seq37082 Length=86608 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| || || ||||| || || |||| | |||||| |||| ||| || Sbjct 35223 GTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGTGGCCATCCTCCAGCTCTTTGCCG 35282 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 | | |||| ||||||||||| || || || |||||||||| |||| ||||| | | Sbjct 35283 GAGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCCTCGTCTTGGATTTTGGCTCTG 35342 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || || | |||||| || ||||||||| | ||| | || ||||| |||| || Sbjct 35343 ACACTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTAATGGTCTTGCCCATCAGGGTC 35402 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 35403 TTCACAAAGATCTGCAT 35419 >seq42836 Length=1893264 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/217 (70%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 ||||||||| || || | || ||||| |||||||||||||| || || ||| || Sbjct 1011600 TCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCC 1011541 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||| || | || || ||||| |||| || | ||||| || ||||| || || ||||| Sbjct 1011540 ATCTTCCACTTGCTTCCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 1011481 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 || || || | || | ||| | || |||| | |||||||| || || | Sbjct 1011480 ATCCTGGATCTTGACCATTACATCTTCTATTGTTTCCGAGGGCTCGACCTTGAGAGTGAT 1011421 Query 118703 CGTTTTGCCGGTC-AGAGTTTTTACAAAAATCTGCAT 118738 || || || ||| ||||| || |||||||||||||| Sbjct 1011420 GGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCAT 1011384 >seq64345 Length=1225891 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 || ||| |||||| | || ||| | || ||| |||| || || || || ||||||||||| Sbjct 821640 ATTCTCCAGCTGTGTGCCTGCGAAAATCAGATGCTGTTGGTCAGGCGGGATGCCCTCCTT 821581 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 |||| ||||| ||| || | || |||||| || || |||||| | ||| | Sbjct 821580 GTCTCGGATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTTGACCTCAAGGGTAAT 821521 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| |||| || || ||||| |||||||| Sbjct 821520 GGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 821485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433421585345440