Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_002484.2
Length=56426
Score E
Sequences producing significant alignments: (Bits) Value
seq74126 140 1e-28
seq18039 116 1e-21
seq17619 98.7 4e-16
seq24916 80.6 1e-10
>seq74126
Length=69924
Score = 140 bits (154), Expect = 1e-28
Identities = 387/583 (66%), Gaps = 14/583 (2%)
Strand=Plus/Plus
Query 12531 TATCAGCGGCAGATAGCGCTGATCAACACGGAAGTCGACAAGCGCAAGGATGCCACCGAG 12590
||||||||||| || | |||||||||||| |||||||| || | || || ||
Sbjct 26427 TATCAGCGGCAAATTGAGCTGATCAACACCACCACCGACAAGCAGAAAAACGCTACTGAA 26486
Query 12591 GTGGCAAAGCTTCAGTTCGAAAT--CGAGTCGGGCAAGCTGGTTGGAATCAATGCCGAGC 12648
|| || ||||| || || || | ||| |||||| ||||||| ||||||||| |||
Sbjct 26487 GTCGCCAAGCTGGCCTTTGAGATTACCAGT--GGCAAGTTGGTTGGCATCAATGCCAAGC 26544
Query 12649 AGCAGAAACGCCTGAATGGCTTGGCAGAAGAGCTTGACCGCCTGAAGCAACTGAAGCAGG 12708
|||| ||||||| | ||| |||| | ||||| ||| |||||| | | ||| |
Sbjct 26545 AGCAACAACGCCTCGAAGGCCTGGCCGCCGAGCTGGACGCCCTGAACAAGATCAAGGCCG 26604
Query 12709 CGAACGAGGATGCAGCGAAGGCTC-AGGCCTTCCGTGCAACGCTCAATGAATCGA-ACGC 12766
| | || || || || || |||| |||||| |||| ||||| | |||| | |
Sbjct 26605 CCACGGAAGACGCCGCCAA-GCTCTCCGCCTTCGACTCAACCCTCAA--ACTCGATATCC 26661
Query 12767 A-ACTGCTCGGGCAGGATTTGCGATTGATCTGGCCGGATCGGGCAGCGGCGACAAGCTGA 12825
| || | || ||||| |||| || | || | || |||| |||||| |
Sbjct 26662 AGACCCAGTCCGATGGCTTTGCACTTGAGCTTGAAGGTGCAGGGCGCGGTGACAAGTACA 26721
Query 12826 GGGAGCGACTGCGCGCAGACCTGGAGATCCAGCAGGATTACAACAAACAGCTTGCCGATC 12885
|| ||| || | | |||| ||||||||| || | |||||| ||| | ||| |
Sbjct 26722 AGGCGCGCTTGAAGGAAACGCTGGCGATCCAGCAAGACTTCAACAAGCAGATGCGCGACC 26781
Query 12886 TACAGAAGCAGTTCAACAGCGCAGAAATCAGCAAGGAACTCTACGACCAAGAAACTGACC 12945
| ||| ||||| ||||||| |||||||| | |||||||| ||||| || |
Sbjct 26782 TGCAGGAGCAGCAGAACAGCGGGAAAATCAGCGAAAGCCTCTACGAGAGCGAAACAGAGC 26841
Query 12946 TTCTGCGCCAGGCTCTCGCTGAGCGTCTGGAAATCCAGCATGAGTACTAC--GCGGCTCA 13003
| || | || | || || |||| || ||||| || || ||| | ||||
Sbjct 26842 TGCTCAATGAAGCGTTGGCGACCCGGCTGGTCATGCAGCAGGACTATTACAACCAGCTC- 26900
Query 13004 GGATGAGGCTCAGAGCAACTGGCTGGATGGCGTCACGTCTGCCTGGGAGAACTACCGCGA 13063
||| | || ||| |||||| |||||||||| | ||||||||||| | ||| | ||
Sbjct 26901 -GATCAAGCACAGTCGAACTGGTTGGATGGCGTTTCCTCTGCCTGGGAAAGCTATCTGGA 26959
Query 13064 CACGGCCACGGATTATCAACAGCAGGCTGCCGATTTCACCACG 13106
|||||||| || ||| ||||| || |||| ||||||
Sbjct 26960 AACGGCCACCGACTATAGCCAGCAAGCGAGCGATGCGACCACG 27002
Score = 129 bits (142), Expect = 2e-25
Identities = 394/593 (66%), Gaps = 27/593 (5%)
Strand=Plus/Plus
Query 17521 GACCGTATCGCGGCGCAGACAGAAAGCCGCGTCTCGGTAGAGGCTACCCGCATGCTACCG 17580
||||| || ||||||| | ||||||| ||| || ||||| || || | || |||
Sbjct 31114 GACCGGCTCTCGGCGCAATCTGAAAGCCTGGTCAGTGTCGAGGCAACACGTGTACTGCCG 31173
Query 17581 ACTCGGCAGAACGGTGCATGGACACCCGAGATAGCAACGCGAGACATCGTCCCATTCCTC 17640
|| | |||||| ||| || |||| | | ||||| || ||||| || | ||
Sbjct 31174 GTGCGCTCGGGCGGTGCCTGGGCAGTGGAGACACCGACGCGGGATATCGTGCCGTGGTTC 31233
Query 17641 TGCTACATCGCGAAGGAACGCGGCTACACCGATGCGGATCTCGATCTTGAGGAACTCGAT 17700
||||||||| ||| ||||||||||||||| ||||| ||||| | || || ||
Sbjct 31234 CTCTACATCGCAAAGTCGGCCGGCTACACCGATGCCGATCTGGATCTGGTCGAGCTGGAC 31293
Query 17701 CGGCTGGACGCAATCTGGA--AGGCCCGCGGCGACACGTTCGACAT---GATCTACGAGG 17755
|| || | | || || | || ||||||||||| || ||||| ||| | || |
Sbjct 31294 CGACTTCATG--ATGTGTACCGCGCACGCGGCGACACCTTTGACATGACGATTGATGACG 31351
Query 17756 ACGGCAAGGTAACTGTCGCGCAGATCATGGATGACGTGCTTGCGGCCGGATATGCGGAGA 17815
| | | ||| | | |||| ||| | |||| ||| || ||||| | | ||
Sbjct 31352 CCAGTACGGTCAAAGACGCG------ATGAACGACGCGCTGGCCGCCGGGTTCTCAGAAC 31405
Query 17816 AGACCATTAAGCGCGGCGTGATCTCTG-CGGCCCGAGACGAGCCAAGGACCACATTCGGG 17874
|||||| || ||||| || | ||| ||| || |||||||| | || |||| |
Sbjct 31406 TGACCATCAACCGCGGGCTGCT-GCTGCCGGTGCGCGACGAGCCGCGCACGCAGTTCGAG 31464
Query 17875 CACATGTACTCGCCGCAGAACATG--GATGGTCCACTGAGGATCAGCATCAGCGCGCCGT 17932
||||||||| |||||||||||||| | | || | | | || | | | || |
Sbjct 31465 CACATGTACACGCCGCAGAACATGACCAAAGGCCTCAAACG-CCAACTGGTGTTC-CCAT 31522
Query 17933 CTGAG-GACGACTACGACGGCGTCGATGTAGAGTTCGTCAATGCCAACGGCTGG--ATCG 17989
| ||| ||||| | ||||| || ||||| |||| | ||| | | | |||| || |
Sbjct 31523 C-GAGCGACGATTTTGACGGTGTTGATGTCGAGTACTTCAGCTCGATCACCTGGGCATGG 31581
Query 17990 AAGATACCGTCCAGTGCCGCCTGCCCGGCGATGTTGGCAGGAAGGTCGAGAAGATCACGG 18049
|| |||||| | |||||| ||| || || |||||| |||||||||||| ||| ||
Sbjct 31582 --GAAACCGTCGAATGCCGCTGGCCGGGTGACCTTGGCAACAAGGTCGAGAAGGTCAAGG 31639
Query 18050 CTGTC-GGCGTGACAGACCGTAACAGGGCGTGGCGATACGGAATGCGCCGCCG 18101
|| | ||| | | || || | | | || ||||| ||| |||||||||||
Sbjct 31640 -TGCCGGGCATCGCCGATCGCACCCGCGCCTGGCGCATCGGCATGCGCCGCCG 31691
Score = 87.8 bits (96), Expect = 6e-13
Identities = 130/183 (71%), Gaps = 1/183 (1%)
Strand=Plus/Plus
Query 9859 AGGCCAGAGATGCAGCAAAGGCCATCAGGGACGCAATTGAGCTTTCAGCTTATGTAGTCC 9918
||||| | || | || || |||||||| |||| ||||| || || || | | |
Sbjct 22636 AGGCCCGTGACGTTGCCAAAGCCATCAGAAACGCTATTGAACTGAAGGCCAATATTGCAC 22695
Query 9919 GCTGGGGAGGGGAGTCTGTTGACCCTGATACCAAGACCTACCGAGTCAGCTTTGACGTCG 9978
||||||| || || || ||||| | |||||||||||||| |||||| || || |
Sbjct 22696 GCTGGGGCGGCGATTCACACGACCCGGCGACCAAGACCTACCGCTACAGCTTCGATGTGG 22755
Query 9979 ACTGGATAGTCCAGCGATAGACCAACCAATACCGACCAACCCGCCTTGAGCGGGtttttt 10038
| ||| | || | ||| || ||||| || || ||| ||||||||||||||| |||||
Sbjct 22756 ATTGGCTGGTACCGCGCTAAACCAA-CACCGCCCCCCAGCCCGCCTTGAGCGGGCTTTTT 22814
Query 10039 tGT 10041
||
Sbjct 22815 CGT 22817
Score = 80.6 bits (88), Expect = 1e-10
Identities = 79/102 (77%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 13484 TGGCATGGCTCACGATGGGATTGATGCTGTTCCGGAGACCGGCACCTGGTTACTCCAGAA 13543
||||||||| || | || || ||| | |||||| |||| ||||||||||| ||| | ||
Sbjct 27563 TGGCATGGCGCATAACGGCATCGATTCGGTTCCGCAGACGGGCACCTGGTTGCTCGAAAA 27622
Query 13544 GGGCGAGAGGGTGACGACGGCAGAGACGAGCGCAAAGCTCGA 13585
||||||| |||| || || || | || ||||| || |||||
Sbjct 27623 GGGCGAGCGGGTCACCACAGCTCAAACCAGCGCCAAACTCGA 27664
>seq18039
Length=443000
Score = 116 bits (128), Expect = 1e-21
Identities = 192/276 (70%), Gaps = 6/276 (2%)
Strand=Plus/Minus
Query 11582 GGTTGGCATTGAGCAAGAGAAGCTTGCTGACATCTTCAAGGACGTTAACGACAAGGTAGG 11641
||| || |||||| || |||||||| ||||| |||||||| || || || | ||
Sbjct 168889 GGTCGGTATTGAGGGTGACAAGCTTGCCGACATTTTCAAGGATGTGAATGATCGCATCGG 168830
Query 11642 CGACTTCCTCAATACCGGCGGTGGCGCGCTTGCCGATTTCTTCGAGAACGTAGCGCCTAA 11701
||||||| | ||||||||||| || | |||||||||||||| | ||||||||
Sbjct 168829 CGACTTCAATCAGACCGGCGGTGGTCCGATGAAGGATTTCTTCGAGAATATTGCGCCTAA 168770
Query 11702 AGTTGGCGTGACCGCAGACCAGTTCCGGAATCTGAGCGGCCCCCAGGCCCT---TGGCTT 11758
|| ||| |||| |||||| ||| | |||| ||| || ||||| || ||
Sbjct 168769 GGTCGGCCTGACGGCAGACGCGTTTAAAAGTCTGTCCGGTCCGCAGGCTCTGCAACTCTA 168710
Query 11759 GTACGTCTCGAGCCTGGAAAAGGCCAAGGTCAGCCAGTCGGACATGACCTTCTATCTTGA 11818
|||| | || || | ||||| | || ||| | | |||||||||||||||||
Sbjct 168709 TTACGAC---AGTCTCAAGAAGGCTGGCGCCAATCAGCAGCAGATGACCTTCTATCTTGA 168653
Query 11819 GGCTATTGCGAGCGATGCGACTGCGCTGCTCCCGCT 11854
|||||| ||| ||| || || || || |||||||
Sbjct 168652 GGCTATGGCGTCCGACGCTACGGCTCTTATCCCGCT 168617
>seq17619
Length=248000
Score = 98.7 bits (108), Expect = 4e-16
Identities = 214/310 (69%), Gaps = 8/310 (3%)
Strand=Plus/Plus
Query 4918 TCGAACTCCGTCGAGTACGTCCGC-GAGACCGGCTTCGTCAACAATGCCGCTCCTGTTTC 4976
|| ||| || |||||| | ||| ||||| |||||| ||| || || || || || |
Sbjct 34744 TCAAACGCCATCGAGTG-GCCCGTAGAGACTGGCTTCACCAATAACGCGGCGCCCGTCGC 34802
Query 4977 GGAAGGCACCCAGAAGCCATACTCCGACCTGACCTTCGAACTGGAAAACGCGCCGGTTCG 5036
||||| | ||| || || || || ||||| ||||| ||| || ||||| ||
Sbjct 34803 AGAAGGTGCTGCGAAACCGTATTCGGATCTGACGTTCGACCTGAAATCTGCGCCTGTCGT 34862
Query 5037 CACCATCGCACACCTGTTCAAGGCAAGTCGCCAGATCCTGGACGACGCTTCGGC-CTTGC 5095
|| ||||| ||||| ||||||| ||| |||||| |||| ||||| | || |||||
Sbjct 34863 GACGATCGCGCACCTCTTCAAGGTGTCTCGACAGATCATGGATGACGCACCCGCGCTTGC 34922
Query 5096 AGAGCTACATCGATGCG-CGCGCTCGT-TACGGCCTGATGCTGGTCGAAGAATGTCAACT 5153
| ||||| || ||| |||| ||| |||||||| | ||||||||| ||| ||
Sbjct 34923 CGCA-TACATTGA-GCGACGCGG-CGTCTACGGCCTTCAGACCGTCGAAGAAAATCAGCT 34979
Query 5154 GCTCTACGGGAACGGGACCGGCGCCAATCTGCACGGCATCATTCCGCAGGCACAGGCCTA 5213
|| |||| || || ||| || || | |||||||||||||||||| || |
Sbjct 34980 CCTGAACGGTTCTGGCACTGGCCAGAACCTTAAGGGCATCATTCCGCAGGCAACTGCTTT 35039
Query 5214 CGCGCCGCCG 5223
|||||| ||
Sbjct 35040 TGCGCCGACG 35049
>seq24916
Length=478
Score = 80.6 bits (88), Expect = 1e-10
Identities = 88/117 (75%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 10465 CGCGCACCTGGTTCGTCTTCCGCGGCTATGTGAGCGACTTCCCGTTCGATTTTGCAGCCA 10524
|||||||||||| ||| || || ||||| ||| ||||||||| || || ||||
Sbjct 30 CGCGCACCTGGTGCGTGTTTGAAGGTTATGTCGCCGATTTCCCGTTCACCTTCGCGGCCA 89
Query 10525 ACGCTGTGGTGACCTCTACCGCAACCATTCAGCGCTCCGGCGGTTCCGCCTGGATTC 10581
| || ||||| | || || | |||||||||| ||||||||| |||||||||||
Sbjct 90 ATGCCGTGGTCGCGTCCACTGTTTCCATTCAGCGTTCCGGCGGTCTCGCCTGGATTC 146
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 180275923033920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |