Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_002484.2 Length=56426 Score E Sequences producing significant alignments: (Bits) Value seq74126 140 1e-28 seq18039 116 1e-21 seq17619 98.7 4e-16 seq24916 80.6 1e-10 >seq74126 Length=69924 Score = 140 bits (154), Expect = 1e-28 Identities = 387/583 (66%), Gaps = 14/583 (2%) Strand=Plus/Plus Query 12531 TATCAGCGGCAGATAGCGCTGATCAACACGGAAGTCGACAAGCGCAAGGATGCCACCGAG 12590 ||||||||||| || | |||||||||||| |||||||| || | || || || Sbjct 26427 TATCAGCGGCAAATTGAGCTGATCAACACCACCACCGACAAGCAGAAAAACGCTACTGAA 26486 Query 12591 GTGGCAAAGCTTCAGTTCGAAAT--CGAGTCGGGCAAGCTGGTTGGAATCAATGCCGAGC 12648 || || ||||| || || || | ||| |||||| ||||||| ||||||||| ||| Sbjct 26487 GTCGCCAAGCTGGCCTTTGAGATTACCAGT--GGCAAGTTGGTTGGCATCAATGCCAAGC 26544 Query 12649 AGCAGAAACGCCTGAATGGCTTGGCAGAAGAGCTTGACCGCCTGAAGCAACTGAAGCAGG 12708 |||| ||||||| | ||| |||| | ||||| ||| |||||| | | ||| | Sbjct 26545 AGCAACAACGCCTCGAAGGCCTGGCCGCCGAGCTGGACGCCCTGAACAAGATCAAGGCCG 26604 Query 12709 CGAACGAGGATGCAGCGAAGGCTC-AGGCCTTCCGTGCAACGCTCAATGAATCGA-ACGC 12766 | | || || || || || |||| |||||| |||| ||||| | |||| | | Sbjct 26605 CCACGGAAGACGCCGCCAA-GCTCTCCGCCTTCGACTCAACCCTCAA--ACTCGATATCC 26661 Query 12767 A-ACTGCTCGGGCAGGATTTGCGATTGATCTGGCCGGATCGGGCAGCGGCGACAAGCTGA 12825 | || | || ||||| |||| || | || | || |||| |||||| | Sbjct 26662 AGACCCAGTCCGATGGCTTTGCACTTGAGCTTGAAGGTGCAGGGCGCGGTGACAAGTACA 26721 Query 12826 GGGAGCGACTGCGCGCAGACCTGGAGATCCAGCAGGATTACAACAAACAGCTTGCCGATC 12885 || ||| || | | |||| ||||||||| || | |||||| ||| | ||| | Sbjct 26722 AGGCGCGCTTGAAGGAAACGCTGGCGATCCAGCAAGACTTCAACAAGCAGATGCGCGACC 26781 Query 12886 TACAGAAGCAGTTCAACAGCGCAGAAATCAGCAAGGAACTCTACGACCAAGAAACTGACC 12945 | ||| ||||| ||||||| |||||||| | |||||||| ||||| || | Sbjct 26782 TGCAGGAGCAGCAGAACAGCGGGAAAATCAGCGAAAGCCTCTACGAGAGCGAAACAGAGC 26841 Query 12946 TTCTGCGCCAGGCTCTCGCTGAGCGTCTGGAAATCCAGCATGAGTACTAC--GCGGCTCA 13003 | || | || | || || |||| || ||||| || || ||| | |||| Sbjct 26842 TGCTCAATGAAGCGTTGGCGACCCGGCTGGTCATGCAGCAGGACTATTACAACCAGCTC- 26900 Query 13004 GGATGAGGCTCAGAGCAACTGGCTGGATGGCGTCACGTCTGCCTGGGAGAACTACCGCGA 13063 ||| | || ||| |||||| |||||||||| | ||||||||||| | ||| | || Sbjct 26901 -GATCAAGCACAGTCGAACTGGTTGGATGGCGTTTCCTCTGCCTGGGAAAGCTATCTGGA 26959 Query 13064 CACGGCCACGGATTATCAACAGCAGGCTGCCGATTTCACCACG 13106 |||||||| || ||| ||||| || |||| |||||| Sbjct 26960 AACGGCCACCGACTATAGCCAGCAAGCGAGCGATGCGACCACG 27002 Score = 129 bits (142), Expect = 2e-25 Identities = 394/593 (66%), Gaps = 27/593 (5%) Strand=Plus/Plus Query 17521 GACCGTATCGCGGCGCAGACAGAAAGCCGCGTCTCGGTAGAGGCTACCCGCATGCTACCG 17580 ||||| || ||||||| | ||||||| ||| || ||||| || || | || ||| Sbjct 31114 GACCGGCTCTCGGCGCAATCTGAAAGCCTGGTCAGTGTCGAGGCAACACGTGTACTGCCG 31173 Query 17581 ACTCGGCAGAACGGTGCATGGACACCCGAGATAGCAACGCGAGACATCGTCCCATTCCTC 17640 || | |||||| ||| || |||| | | ||||| || ||||| || | || Sbjct 31174 GTGCGCTCGGGCGGTGCCTGGGCAGTGGAGACACCGACGCGGGATATCGTGCCGTGGTTC 31233 Query 17641 TGCTACATCGCGAAGGAACGCGGCTACACCGATGCGGATCTCGATCTTGAGGAACTCGAT 17700 ||||||||| ||| ||||||||||||||| ||||| ||||| | || || || Sbjct 31234 CTCTACATCGCAAAGTCGGCCGGCTACACCGATGCCGATCTGGATCTGGTCGAGCTGGAC 31293 Query 17701 CGGCTGGACGCAATCTGGA--AGGCCCGCGGCGACACGTTCGACAT---GATCTACGAGG 17755 || || | | || || | || ||||||||||| || ||||| ||| | || | Sbjct 31294 CGACTTCATG--ATGTGTACCGCGCACGCGGCGACACCTTTGACATGACGATTGATGACG 31351 Query 17756 ACGGCAAGGTAACTGTCGCGCAGATCATGGATGACGTGCTTGCGGCCGGATATGCGGAGA 17815 | | | ||| | | |||| ||| | |||| ||| || ||||| | | || Sbjct 31352 CCAGTACGGTCAAAGACGCG------ATGAACGACGCGCTGGCCGCCGGGTTCTCAGAAC 31405 Query 17816 AGACCATTAAGCGCGGCGTGATCTCTG-CGGCCCGAGACGAGCCAAGGACCACATTCGGG 17874 |||||| || ||||| || | ||| ||| || |||||||| | || |||| | Sbjct 31406 TGACCATCAACCGCGGGCTGCT-GCTGCCGGTGCGCGACGAGCCGCGCACGCAGTTCGAG 31464 Query 17875 CACATGTACTCGCCGCAGAACATG--GATGGTCCACTGAGGATCAGCATCAGCGCGCCGT 17932 ||||||||| |||||||||||||| | | || | | | || | | | || | Sbjct 31465 CACATGTACACGCCGCAGAACATGACCAAAGGCCTCAAACG-CCAACTGGTGTTC-CCAT 31522 Query 17933 CTGAG-GACGACTACGACGGCGTCGATGTAGAGTTCGTCAATGCCAACGGCTGG--ATCG 17989 | ||| ||||| | ||||| || ||||| |||| | ||| | | | |||| || | Sbjct 31523 C-GAGCGACGATTTTGACGGTGTTGATGTCGAGTACTTCAGCTCGATCACCTGGGCATGG 31581 Query 17990 AAGATACCGTCCAGTGCCGCCTGCCCGGCGATGTTGGCAGGAAGGTCGAGAAGATCACGG 18049 || |||||| | |||||| ||| || || |||||| |||||||||||| ||| || Sbjct 31582 --GAAACCGTCGAATGCCGCTGGCCGGGTGACCTTGGCAACAAGGTCGAGAAGGTCAAGG 31639 Query 18050 CTGTC-GGCGTGACAGACCGTAACAGGGCGTGGCGATACGGAATGCGCCGCCG 18101 || | ||| | | || || | | | || ||||| ||| ||||||||||| Sbjct 31640 -TGCCGGGCATCGCCGATCGCACCCGCGCCTGGCGCATCGGCATGCGCCGCCG 31691 Score = 87.8 bits (96), Expect = 6e-13 Identities = 130/183 (71%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 9859 AGGCCAGAGATGCAGCAAAGGCCATCAGGGACGCAATTGAGCTTTCAGCTTATGTAGTCC 9918 ||||| | || | || || |||||||| |||| ||||| || || || | | | Sbjct 22636 AGGCCCGTGACGTTGCCAAAGCCATCAGAAACGCTATTGAACTGAAGGCCAATATTGCAC 22695 Query 9919 GCTGGGGAGGGGAGTCTGTTGACCCTGATACCAAGACCTACCGAGTCAGCTTTGACGTCG 9978 ||||||| || || || ||||| | |||||||||||||| |||||| || || | Sbjct 22696 GCTGGGGCGGCGATTCACACGACCCGGCGACCAAGACCTACCGCTACAGCTTCGATGTGG 22755 Query 9979 ACTGGATAGTCCAGCGATAGACCAACCAATACCGACCAACCCGCCTTGAGCGGGtttttt 10038 | ||| | || | ||| || ||||| || || ||| ||||||||||||||| ||||| Sbjct 22756 ATTGGCTGGTACCGCGCTAAACCAA-CACCGCCCCCCAGCCCGCCTTGAGCGGGCTTTTT 22814 Query 10039 tGT 10041 || Sbjct 22815 CGT 22817 Score = 80.6 bits (88), Expect = 1e-10 Identities = 79/102 (77%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 13484 TGGCATGGCTCACGATGGGATTGATGCTGTTCCGGAGACCGGCACCTGGTTACTCCAGAA 13543 ||||||||| || | || || ||| | |||||| |||| ||||||||||| ||| | || Sbjct 27563 TGGCATGGCGCATAACGGCATCGATTCGGTTCCGCAGACGGGCACCTGGTTGCTCGAAAA 27622 Query 13544 GGGCGAGAGGGTGACGACGGCAGAGACGAGCGCAAAGCTCGA 13585 ||||||| |||| || || || | || ||||| || ||||| Sbjct 27623 GGGCGAGCGGGTCACCACAGCTCAAACCAGCGCCAAACTCGA 27664 >seq18039 Length=443000 Score = 116 bits (128), Expect = 1e-21 Identities = 192/276 (70%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 11582 GGTTGGCATTGAGCAAGAGAAGCTTGCTGACATCTTCAAGGACGTTAACGACAAGGTAGG 11641 ||| || |||||| || |||||||| ||||| |||||||| || || || | || Sbjct 168889 GGTCGGTATTGAGGGTGACAAGCTTGCCGACATTTTCAAGGATGTGAATGATCGCATCGG 168830 Query 11642 CGACTTCCTCAATACCGGCGGTGGCGCGCTTGCCGATTTCTTCGAGAACGTAGCGCCTAA 11701 ||||||| | ||||||||||| || | |||||||||||||| | |||||||| Sbjct 168829 CGACTTCAATCAGACCGGCGGTGGTCCGATGAAGGATTTCTTCGAGAATATTGCGCCTAA 168770 Query 11702 AGTTGGCGTGACCGCAGACCAGTTCCGGAATCTGAGCGGCCCCCAGGCCCT---TGGCTT 11758 || ||| |||| |||||| ||| | |||| ||| || ||||| || || Sbjct 168769 GGTCGGCCTGACGGCAGACGCGTTTAAAAGTCTGTCCGGTCCGCAGGCTCTGCAACTCTA 168710 Query 11759 GTACGTCTCGAGCCTGGAAAAGGCCAAGGTCAGCCAGTCGGACATGACCTTCTATCTTGA 11818 |||| | || || | ||||| | || ||| | | ||||||||||||||||| Sbjct 168709 TTACGAC---AGTCTCAAGAAGGCTGGCGCCAATCAGCAGCAGATGACCTTCTATCTTGA 168653 Query 11819 GGCTATTGCGAGCGATGCGACTGCGCTGCTCCCGCT 11854 |||||| ||| ||| || || || || ||||||| Sbjct 168652 GGCTATGGCGTCCGACGCTACGGCTCTTATCCCGCT 168617 >seq17619 Length=248000 Score = 98.7 bits (108), Expect = 4e-16 Identities = 214/310 (69%), Gaps = 8/310 (3%) Strand=Plus/Plus Query 4918 TCGAACTCCGTCGAGTACGTCCGC-GAGACCGGCTTCGTCAACAATGCCGCTCCTGTTTC 4976 || ||| || |||||| | ||| ||||| |||||| ||| || || || || || | Sbjct 34744 TCAAACGCCATCGAGTG-GCCCGTAGAGACTGGCTTCACCAATAACGCGGCGCCCGTCGC 34802 Query 4977 GGAAGGCACCCAGAAGCCATACTCCGACCTGACCTTCGAACTGGAAAACGCGCCGGTTCG 5036 ||||| | ||| || || || || ||||| ||||| ||| || ||||| || Sbjct 34803 AGAAGGTGCTGCGAAACCGTATTCGGATCTGACGTTCGACCTGAAATCTGCGCCTGTCGT 34862 Query 5037 CACCATCGCACACCTGTTCAAGGCAAGTCGCCAGATCCTGGACGACGCTTCGGC-CTTGC 5095 || ||||| ||||| ||||||| ||| |||||| |||| ||||| | || ||||| Sbjct 34863 GACGATCGCGCACCTCTTCAAGGTGTCTCGACAGATCATGGATGACGCACCCGCGCTTGC 34922 Query 5096 AGAGCTACATCGATGCG-CGCGCTCGT-TACGGCCTGATGCTGGTCGAAGAATGTCAACT 5153 | ||||| || ||| |||| ||| |||||||| | ||||||||| ||| || Sbjct 34923 CGCA-TACATTGA-GCGACGCGG-CGTCTACGGCCTTCAGACCGTCGAAGAAAATCAGCT 34979 Query 5154 GCTCTACGGGAACGGGACCGGCGCCAATCTGCACGGCATCATTCCGCAGGCACAGGCCTA 5213 || |||| || || ||| || || | |||||||||||||||||| || | Sbjct 34980 CCTGAACGGTTCTGGCACTGGCCAGAACCTTAAGGGCATCATTCCGCAGGCAACTGCTTT 35039 Query 5214 CGCGCCGCCG 5223 |||||| || Sbjct 35040 TGCGCCGACG 35049 >seq24916 Length=478 Score = 80.6 bits (88), Expect = 1e-10 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 10465 CGCGCACCTGGTTCGTCTTCCGCGGCTATGTGAGCGACTTCCCGTTCGATTTTGCAGCCA 10524 |||||||||||| ||| || || ||||| ||| ||||||||| || || |||| Sbjct 30 CGCGCACCTGGTGCGTGTTTGAAGGTTATGTCGCCGATTTCCCGTTCACCTTCGCGGCCA 89 Query 10525 ACGCTGTGGTGACCTCTACCGCAACCATTCAGCGCTCCGGCGGTTCCGCCTGGATTC 10581 | || ||||| | || || | |||||||||| ||||||||| ||||||||||| Sbjct 90 ATGCCGTGGTCGCGTCCACTGTTTCCATTCAGCGTTCCGGCGGTCTCGCCTGGATTC 146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180275923033920