Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq26065 107 2e-18 seq29163 102 8e-17 >seq26065 Length=1373002 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||||| | || ||||||||| | | | || |||||||| | Sbjct 1028173 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAAC 1028114 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || ||||||||||||||||| || ||||| ||||| |||| Sbjct 1028113 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTTT 1028054 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 1028053 CCATAAAATCAAAGGGATTTTCTG 1028030 >seq29163 Length=2664742 Score = 102 bits (112), Expect = 8e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 ||||| || || || | || || ||||| || || || ||||| ||||||||||| || Sbjct 301515 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 301456 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||||| ||||| ||||| |||||||| || ||||| ||||| ||||| || Sbjct 301455 AGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 301396 Query 16379 ACCA 16382 |||| Sbjct 301395 ACCA 301392 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||||| ||| |||| | ||||| || | |||||||| |||||||| || || || | Sbjct 303118 TTGACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 303059 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 | || | |||||||||||||||||| ||||| ||||||| Sbjct 303058 CCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTT 303020 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 16488 TTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 |||||||| |||| ||| ||||| || || || | |||||||||||| ||||| || | Sbjct 299842 TTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGT 299783 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 | ||||| || || || || ||||| || || | ||| |||| || || ||||| Sbjct 299782 TTTCCATGGCAATTTGGAAGCCATAGAAACAACGAGCCTCGGTAATCTGAACTTC 299728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462064982152000