Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq64303 2538 0.0
seq58749 154 1e-32
>seq64303
Length=392065
Score = 2538 bits (2814), Expect = 0.0
Identities = 1584/1705 (93%), Gaps = 25/1705 (1%)
Strand=Plus/Minus
Query 107071 GTCCTAACTCCAGTCCCAGCATGACTAGCTGGTTTGCAGCATCAGGTTACAGATGTCCAT 107130
|||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||
Sbjct 199942 GTCCTAACTCCAGTCCCAGCATGATCAGCTGGTTTGCAGCGTCAGGTTACAGATCTCCAT 199883
Query 107131 CCACAAGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTT 107190
||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 199882 CCACAAGGGTCCTAGGCAGGACTTGACTGAGGATATTTGTCTAGAGAAGAAATCTATCTT 199823
Query 107191 TACCATCACTCTGGAGTTGAACTTGATGTTC-------------TGGATTAGTTTGTAAT 107237
| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 199822 TGCCATCACTCTGGAGTTGAACTTGATGTTCATTGAGGATATTCTGGATTAGTTTGTAAC 199763
Query 107238 TAAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCTGTGCCCAAACTCTC 107297
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 199762 TAAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTCCCTGTACCCAAACTCTA 199703
Query 107298 CTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCAT 107357
|||| ||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||
Sbjct 199702 CTGACCTCCCATCCCATGAAGATGACTGGGTGGAAGAAGAAGCTCTGCCGGGGGCATCAT 199643
Query 107358 CTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGG 107417
|||||||||||||||||||||||||||||||| |||||| ||||||| ||||| ||||||
Sbjct 199642 CTGTGGGCCCTGGGCTGCTATATGCTGCTGGCTGTTGTTGCTCTGAGGCTTTCTCTCAGG 199583
Query 107418 TTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGT 107477
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 199582 TTGAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAAAGTCAGCGTTGT 199523
Query 107478 AGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGG 107537
|||||| | |||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 199522 AGGGACGTCTTGTACAAGAACCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGG 199463
Query 107538 ATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAG 107597
||||| ||||||||||||||||| ||||| ||||| ||||| |||||||||||||| |||
Sbjct 199462 ATCACACGAGGGGACCAGGAAGCGGTGGTTCAGGCTCTCCTGGACAACCTGGAAGTCAAG 199403
Query 107598 AAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGC 107657
|| ||||||| |||| |||||| |||||||||||||||||||||||| ||||||||||
Sbjct 199402 AAGAAGCGGTTGCCTTTCACTGACACCTATTACCTCAACATAACCAGGGACTGTGAGCAG 199343
Query 107658 TTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCC 107717
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 199342 TTTAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGCAAAGAAGAGCTAGACTTCCCC 199283
Query 107718 ATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCC 107777
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199282 ATTGCATACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCT 199223
Query 107778 GTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTC 107837
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 199222 GTGTATGCCCCTCAGAACATATACTGTGTCCATGTGGATGTGAAGTCCCCAGAAACTTTC 199163
Query 107838 AAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTG 107897
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199162 AAAGAGGCAGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTG 199103
Query 107898 GTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGAC 107957
||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 199102 GTCCCCGTGGTTTATGCCTCCTGGTCCAGAGTGCAGGCCGACCTGAACTGTATGGAAGAC 199043
Query 107958 TTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCC 108017
|||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 199042 TTGCTCCAGAGCTCGGTGCCATGGAAATACTTACTGAATACATGTGGGACAGACTTCCCC 198983
Query 108018 ATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATG 108077
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 198982 ATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAATGGGAAGAACAGTATG 198923
Query 108078 GAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACA 108137
||||||||| |||||||||||| |||||||| |||||||||||||||||| |||||||||
Sbjct 198922 GAGTCTGAGATACCTTCTGAGTACAAAAAAACTCGCTGGAAATACCGCTACGAGGTGACA 198863
Query 108138 GACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTC 108197
|||| ||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 198862 GACAGACTGTCCCTAACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCTATGTTC 198803
Query 108198 ACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCT 108257
|| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 198802 ACGGGGAATGCCTATTTTGTGGCTTCTCGAGCCTTTGTCCAACATGTCTTAGAGAACCCC 198743
Query 108258 AAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGG 108317
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 198742 AAATCCCAAAGACTGATTGAATGGGTCAAAGACACCTATAGCCCTGACGAACACCTCTGG 198683
Query 108318 GCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCAC 108377
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 198682 GCCACCCTTCAGCGTGCTCCATGGATGCCTGGCTCTGTTCCCTACCACCCCAAGTATCAC 198623
Query 108378 ATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTC 108437
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 198622 ATCTCAGACATGACTGCCATCGCCAGGCTGGTCAAGTGGCAGGGCCACGAGGGAGATGTC 198563
Query 108438 AGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTAC 108497
||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 198562 AGCATGGGGGCACCTTATGCACCCTGCTCTGGAATCCATCAGCGGGCCATCTGCATTTAT 198503
Query 108498 GGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198502 GGGGCCGGGGACCTGCACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 198443
Query 108558 CCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATC 108617
|| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 198442 CCAAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTATTTACGCCATAAGGCCATC 198383
Query 108618 TATGGGACTGAACTTTGAGCTGCACTGT-----------GGGCCAGGGAC-TGTGCCAAC 108665
|||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 198382 TATGGGACTGAACTTTGAGCTGTACTGTGGGATACCCGAGGGCCAGGGACATGTGCCAAC 198323
Query 108666 ATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCATGGCA 108725
| | ||||||| | |||||||||||| |||||||||| | |||||||||||| |||||||
Sbjct 198322 AGGGCCAGGGCATGCTGGTACTGTGTAGGGTGGGGGATGGGGGCTGTGGAATTCATGGCA 198263
Query 108726 TCCCCCAGGGTCAGAGGGCTGCTTT 108750
|||||||||||||||||||||||||
Sbjct 198262 TCCCCCAGGGTCAGAGGGCTGCTTT 198238
>seq58749
Length=2680103
Score = 154 bits (170), Expect = 1e-32
Identities = 102/113 (90%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 108751 GATGGGGTCAGGATGTTGGCTCCAGGAGAGGCCTGTTCACCCATGTCTCTTGGAGCTCCA 108810
||| | ||||||||||||||||||||||| | |||||||||||| ||| ||||||||||
Sbjct 1012025 GATAGTGTCAGGATGTTGGCTCCAGGAGATGTCTGTTCACCCATTTCTTCTGGAGCTCCA 1011966
Query 108811 CATATGAGAGTGTTGGGTAGGGTGATGTTTGGTCCCGAATTAACTTCTCTAAC 108863
| |||||| |||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1011965 CGTATGAGTGTGTTGGGTATGGTGATGTTTGGCCCCGAATTAACTTCTCTAAC 1011913
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347940613249680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |