Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq23781 284 1e-71
seq66935 89.7 4e-13
seq34278 89.7 4e-13
>seq23781
Length=1882226
Score = 284 bits (314), Expect = 1e-71
Identities = 451/647 (70%), Gaps = 0/647 (0%)
Strand=Plus/Plus
Query 19978 GATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAGA 20037
|| || ||||| ||||| || | || || || || ||||| | || || ||| |||||
Sbjct 24774 GACCGCACCGGCACTGGCACCCTGTCGGTGTTCGGGATGCAGGCGCGGTACAACCTGAGA 24833
Query 20038 AATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTA 20097
|||||||||| | | || || ||||| || || |||||||| ||| | || |||||
Sbjct 24834 GATGAATTTCCTCTGCTGACAACCAAACGTGTTTTCTGGAAAGGTGTTTTGGAGGAGTTG 24893
Query 20098 TTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATT 20157
| |||||||| || ||||| || || ||| || || || ||||| || |||
Sbjct 24894 CTGTGGTTTATCAAGGGATCCACCAACGCTAAGGAACTGTCTTCCAAGGGAGTGAAAATT 24953
Query 20158 TGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAG 20217
||| || | || || | || || | || || || ||| | ||
Sbjct 24954 TGGGATGCCAACGGGTCCCGAGACTTCTTGGATGGCTTGGGCTTCTCCAATAGAGCTGAA 25013
Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277
||||||||||| || || ||||| || || ||||| |||||||| |||||||| ||
Sbjct 25014 GGGGATTTGGGCCCGGTTTATGGCTTCCAGTGGAGGCATTTTGGGGCTGAATACAAAGAT 25073
Query 20278 ATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATT 20337
||| | || |||||| || ||||||||||||||| | ||||| || || | |||
Sbjct 25074 ATGGATTCAGATTATTCAGGTCAAGGAGTAGATCAACTGCAAAAAGTGATCGACACAATC 25133
Query 20338 AAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCT 20397
||||| ||||| ||| |||||||||| || | || || ||||| | |||||| | |||
Sbjct 25134 AAAACCAACCCTAACAACAGAAGAATCATCCTGTGTGCTTGGAATCCAAAAGATCTCCCT 25193
Query 20398 TTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTG 20457
| ||||| | || ||||| || || ||||| || ||||| | ||| || ||
Sbjct 25194 CTCATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTGAATGGGGAGCTG 25253
Query 20458 TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCA 20517
|| || || |||| ||| | || | || ||||| |||||||| || |||||||||||
Sbjct 25254 TCCTGCCAGTTGTACCAAAGGTCGGGAGACATGGGCCTGGGTGTGCCCTTCAATATTGCC 25313
Query 20518 AGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTA 20577
|| || || ||||| || || ||||| ||||| | || || | || | ||||||||
Sbjct 25314 AGCTACGCCCTGCTCACCTACATGATCGCACACATCACGGACCTGAAGCCAGGTGACTTC 25373
Query 20578 GTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACC 20624
|| ||||| | ||||| || || |||||||| ||||| || || ||
Sbjct 25374 GTACACACTCTGGGAGATGCACACATTTACCTGAATCACATCGAGCC 25420
>seq66935
Length=8519
Score = 89.7 bits (98), Expect = 4e-13
Identities = 117/162 (72%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447
|||| | ||| | ||||| | || ||||| || || ||||| || ||||| | ||
Sbjct 2611 AGATCTCCCTCTCATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTGAA 2552
Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507
| || |||| || || |||| ||||| || | || ||||| |||||||| || ||
Sbjct 2551 TGGGGAGCTGTCCTGCCAGTTGTACCAACGGTCGGGAGACATGGGCCTGGGTGTGCCCTT 2492
Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549
||||||||| || || || ||||| || || ||||| |||||
Sbjct 2491 CAATATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 2450
>seq34278
Length=4487281
Score = 89.7 bits (98), Expect = 4e-13
Identities = 117/162 (72%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447
|||| | ||| | ||||| | || ||||| || || ||||| || ||||| | ||
Sbjct 3963449 AGATCTCCCTCTCATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTGAA 3963390
Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507
| || |||| || || |||| ||||| || | || ||||| |||||||| || ||
Sbjct 3963389 TGGGGAGCTGTCCTGCCAGTTGTACCAACGGTCGGGAGACATGGGCCTGGGTGTGCCCTT 3963330
Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549
||||||||| || || || ||||| || || ||||| |||||
Sbjct 3963329 CAATATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 3963288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398807833947400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |