Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq23781 284 1e-71 seq66935 89.7 4e-13 seq34278 89.7 4e-13 >seq23781 Length=1882226 Score = 284 bits (314), Expect = 1e-71 Identities = 451/647 (70%), Gaps = 0/647 (0%) Strand=Plus/Plus Query 19978 GATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAGA 20037 || || ||||| ||||| || | || || || || ||||| | || || ||| ||||| Sbjct 24774 GACCGCACCGGCACTGGCACCCTGTCGGTGTTCGGGATGCAGGCGCGGTACAACCTGAGA 24833 Query 20038 AATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTA 20097 |||||||||| | | || || ||||| || || |||||||| ||| | || ||||| Sbjct 24834 GATGAATTTCCTCTGCTGACAACCAAACGTGTTTTCTGGAAAGGTGTTTTGGAGGAGTTG 24893 Query 20098 TTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATT 20157 | |||||||| || ||||| || || ||| || || || ||||| || ||| Sbjct 24894 CTGTGGTTTATCAAGGGATCCACCAACGCTAAGGAACTGTCTTCCAAGGGAGTGAAAATT 24953 Query 20158 TGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAG 20217 ||| || | || || | || || | || || || ||| | || Sbjct 24954 TGGGATGCCAACGGGTCCCGAGACTTCTTGGATGGCTTGGGCTTCTCCAATAGAGCTGAA 25013 Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277 ||||||||||| || || ||||| || || ||||| |||||||| |||||||| || Sbjct 25014 GGGGATTTGGGCCCGGTTTATGGCTTCCAGTGGAGGCATTTTGGGGCTGAATACAAAGAT 25073 Query 20278 ATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATT 20337 ||| | || |||||| || ||||||||||||||| | ||||| || || | ||| Sbjct 25074 ATGGATTCAGATTATTCAGGTCAAGGAGTAGATCAACTGCAAAAAGTGATCGACACAATC 25133 Query 20338 AAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCT 20397 ||||| ||||| ||| |||||||||| || | || || ||||| | |||||| | ||| Sbjct 25134 AAAACCAACCCTAACAACAGAAGAATCATCCTGTGTGCTTGGAATCCAAAAGATCTCCCT 25193 Query 20398 TTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTG 20457 | ||||| | || ||||| || || ||||| || ||||| | ||| || || Sbjct 25194 CTCATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTGAATGGGGAGCTG 25253 Query 20458 TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCA 20517 || || || |||| ||| | || | || ||||| |||||||| || ||||||||||| Sbjct 25254 TCCTGCCAGTTGTACCAAAGGTCGGGAGACATGGGCCTGGGTGTGCCCTTCAATATTGCC 25313 Query 20518 AGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTA 20577 || || || ||||| || || ||||| ||||| | || || | || | |||||||| Sbjct 25314 AGCTACGCCCTGCTCACCTACATGATCGCACACATCACGGACCTGAAGCCAGGTGACTTC 25373 Query 20578 GTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACC 20624 || ||||| | ||||| || || |||||||| ||||| || || || Sbjct 25374 GTACACACTCTGGGAGATGCACACATTTACCTGAATCACATCGAGCC 25420 >seq66935 Length=8519 Score = 89.7 bits (98), Expect = 4e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447 |||| | ||| | ||||| | || ||||| || || ||||| || ||||| | || Sbjct 2611 AGATCTCCCTCTCATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTGAA 2552 Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507 | || |||| || || |||| ||||| || | || ||||| |||||||| || || Sbjct 2551 TGGGGAGCTGTCCTGCCAGTTGTACCAACGGTCGGGAGACATGGGCCTGGGTGTGCCCTT 2492 Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549 ||||||||| || || || ||||| || || ||||| ||||| Sbjct 2491 CAATATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 2450 >seq34278 Length=4487281 Score = 89.7 bits (98), Expect = 4e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447 |||| | ||| | ||||| | || ||||| || || ||||| || ||||| | || Sbjct 3963449 AGATCTCCCTCTCATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTGAA 3963390 Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507 | || |||| || || |||| ||||| || | || ||||| |||||||| || || Sbjct 3963389 TGGGGAGCTGTCCTGCCAGTTGTACCAACGGTCGGGAGACATGGGCCTGGGTGTGCCCTT 3963330 Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549 ||||||||| || || || ||||| || || ||||| ||||| Sbjct 3963329 CAATATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 3963288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398807833947400