Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq33366 104 2e-17
seq61258 84.2 2e-11
seq34609 84.2 2e-11
>seq33366
Length=1752596
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| |||| || | ||| |||| ||| || || || ||||| ||||||||||| || |
Sbjct 780174 CCACCCCTAAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 780115
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | |||||||| || ||||| ||| |||| || || || || || |||
Sbjct 780114 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 780055
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| |||||||||||| || | ||| || | | | ||||||| ||||||
Sbjct 780054 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 779995
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
|| | ||||||| | |||||||||| ||||| || || |||||||||||
Sbjct 779994 TCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATTTGCATTTT 779945
>seq61258
Length=1460494
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/228 (68%), Gaps = 1/228 (0%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || |||| || || | ||||| || || || |||||||||||||||| ||
Sbjct 487694 TCCACCACGACGTCTCAGCACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTTGGT 487635
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
|| | | || ||||||| ||||||||| ||| ||| |||||||| || || ||
Sbjct 487634 CAAAGACATCCA-TCTTCCAGTTGTTTGCCAGCAACGATCAGTCTTTGCTGGTCAGGAGG 487576
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
|| ||||||||||| |||| ||| || | | | | || || ||||| |
Sbjct 487575 AACACCTTCCTTATCCTGGATTTTGGCCTTTACATTTTCTATTGTATCCAAGGGCTTGAC 487516
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
| | | |||||| || || |||| || || || ||||| |||||
Sbjct 487515 CTTGAGAGAGATGCTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 487468
>seq34609
Length=2775773
Score = 84.2 bits (92), Expect = 2e-11
Identities = 171/253 (68%), Gaps = 2/253 (1%)
Strand=Plus/Plus
Query 18078 AATACATTTTCTTTTTGTTA--TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135
|| || | ||| |||| ||| ||| || || ||||| | | | ||||| || || |
Sbjct 2545692 AAGACTTCTTCCTTTTCTTAGCTCCACCACGAAGTCTCAACGCTAGATGAAGAGTGGACT 2545751
Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195
| ||||||||||||||||| | || || | |||||||| ||| ||||| || |||
Sbjct 2545752 CCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAACAAAGA 2545811
Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG 18255
| |||||||| || || || | ||||||||||| || | ||| || | |
Sbjct 2545812 TCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTT 2545871
Query 18256 CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAA 18315
| | || || ||||||| |||| |||||| | || || |||| || || | |
Sbjct 2545872 CTATTGTATCTGAGGGCTCGACCTCAAGAGTGATGGTCTTCCCTGTCAGGGTCTTCATGA 2545931
Query 18316 AAATTTGCATTTT 18328
|||| ||||| ||
Sbjct 2545932 AAATCTGCATCTT 2545944
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 378986529923400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |