Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq33366 104 2e-17 seq61258 84.2 2e-11 seq34609 84.2 2e-11 >seq33366 Length=1752596 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| |||| ||| || || || ||||| ||||||||||| || | Sbjct 780174 CCACCCCTAAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 780115 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||| || ||||| ||| |||| || || || || || ||| Sbjct 780114 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 780055 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||||||| || | ||| || | | | ||||||| |||||| Sbjct 780054 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 779995 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || | ||||||| | |||||||||| ||||| || || ||||||||||| Sbjct 779994 TCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATTTGCATTTT 779945 >seq61258 Length=1460494 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || |||| || || | ||||| || || || |||||||||||||||| || Sbjct 487694 TCCACCACGACGTCTCAGCACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTTGGT 487635 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || | | || ||||||| ||||||||| ||| ||| |||||||| || || || Sbjct 487634 CAAAGACATCCA-TCTTCCAGTTGTTTGCCAGCAACGATCAGTCTTTGCTGGTCAGGAGG 487576 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 || ||||||||||| |||| ||| || | | | | || || ||||| | Sbjct 487575 AACACCTTCCTTATCCTGGATTTTGGCCTTTACATTTTCTATTGTATCCAAGGGCTTGAC 487516 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | | | |||||| || || |||| || || || ||||| ||||| Sbjct 487515 CTTGAGAGAGATGCTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 487468 >seq34609 Length=2775773 Score = 84.2 bits (92), Expect = 2e-11 Identities = 171/253 (68%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 18078 AATACATTTTCTTTTTGTTA--TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135 || || | ||| |||| ||| ||| || || ||||| | | | ||||| || || | Sbjct 2545692 AAGACTTCTTCCTTTTCTTAGCTCCACCACGAAGTCTCAACGCTAGATGAAGAGTGGACT 2545751 Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195 | ||||||||||||||||| | || || | |||||||| ||| ||||| || ||| Sbjct 2545752 CCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAACAAAGA 2545811 Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG 18255 | |||||||| || || || | ||||||||||| || | ||| || | | Sbjct 2545812 TCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTT 2545871 Query 18256 CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAA 18315 | | || || ||||||| |||| |||||| | || || |||| || || | | Sbjct 2545872 CTATTGTATCTGAGGGCTCGACCTCAAGAGTGATGGTCTTCCCTGTCAGGGTCTTCATGA 2545931 Query 18316 AAATTTGCATTTT 18328 |||| ||||| || Sbjct 2545932 AAATCTGCATCTT 2545944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378986529923400