Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq36501 116 3e-21
seq61258 104 2e-17
seq34609 87.8 2e-12
seq70604 82.4 7e-11
>seq36501
Length=2370580
Score = 116 bits (128), Expect = 3e-21
Identities = 115/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107
||||| |||||| || ||||| || ||||| || || || ||||| || || || ||
Sbjct 2283026 ACCTCATCTTTGCTGGTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 2282967
Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167
||||| || ||||||||| || ||||| || ||||| ||||||||||||||||| ||
Sbjct 2282966 CCCAAGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTA 2282907
Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196
|| ||||| ||| ||||| ||||| ||
Sbjct 2282906 CCTGTCTCTGTCTGAGACTCAATGATGGC 2282878
>seq61258
Length=1460494
Score = 104 bits (114), Expect = 2e-17
Identities = 154/217 (71%), Gaps = 1/217 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| ||||| |||||||| || | ||| | || | || | || |
Sbjct 487468 ATGCAGATTTTCGTGAAGACCCTGACAGGGAAGAGCATCTCTCTCAAGGTCAAGCCCTTG 487527
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | |||| || || | ||| ||| |||||||| || || || ||||||
Sbjct 487528 GATACAATAGAAAATGTAAAGGCCAAAATCCAGGATAAGGAAGGTGTTCCTCCTGACCAG 487587
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| | || || | ||||||||||| ||||||| | ||| || ||| | | || |||
Sbjct 487588 CAAAGACTGATCGTTGCTGGCAAACAACTGGAAGA-TGGATGTCTTTGACCAACTACAAC 487646
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGAC 31409
|||||||| || || ||||||||||| || || ||||
Sbjct 487647 ATTCAAAAGGAGTCCACTCTTCATCTTGTGCTGAGAC 487683
>seq34609
Length=2775773
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||| | ||||| |||||||| || || ||||| | || || || ||
Sbjct 2545944 AAGATGCAGATTTTCATGAAGACCCTGACAGGGAAGACCATCACTCTTGAGGTCGAGCCC 2545885
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| || | | |||| || || | || ||| |||||||| | || || |||
Sbjct 2545884 TCAGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 2545825
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
||||| | || || || | |||||| || ||||||| | | | ||| || || ||
Sbjct 2545824 CAGCAAAGACTGATCTTTGTTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTA 2545766
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCT 31398
||||||||||| || || |||||||||||
Sbjct 2545765 CAACATTCAAAAGGAGTCCACTCTTCATCT 2545736
>seq70604
Length=2882449
Score = 82.4 bits (90), Expect = 7e-11
Identities = 153/222 (69%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| || || || || || ||||| | || || | ||
Sbjct 1789582 AAGATGCAGATTTTCGTGAAGACCCTAACGGGGAAGACCATCACTCTTGAGGTCCAGCCC 1789523
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| || | | |||| || || | || ||| |||||||| | || || |||
Sbjct 1789522 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 1789463
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
||||| | || || || ||||||| || ||||||| | | | ||| || || ||
Sbjct 1789462 CAGCAAAGACTGATCTTTGCTGGCAGGCAACTGGAAGA-TGGACGTACTTTGTCTGACTA 1789404
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||||||||||| || || ||||||||||| || | |||||
Sbjct 1789403 CAACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 1789362
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445335566774400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |