Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq36501 116 3e-21 seq61258 104 2e-17 seq34609 87.8 2e-12 seq70604 82.4 7e-11 >seq36501 Length=2370580 Score = 116 bits (128), Expect = 3e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || ||||| || ||||| || || || ||||| || || || || Sbjct 2283026 ACCTCATCTTTGCTGGTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 2282967 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 ||||| || ||||||||| || ||||| || ||||| ||||||||||||||||| || Sbjct 2282966 CCCAAGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTA 2282907 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 2282906 CCTGTCTCTGTCTGAGACTCAATGATGGC 2282878 >seq61258 Length=1460494 Score = 104 bits (114), Expect = 2e-17 Identities = 154/217 (71%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| |||||||| || | ||| | || | || | || | Sbjct 487468 ATGCAGATTTTCGTGAAGACCCTGACAGGGAAGAGCATCTCTCTCAAGGTCAAGCCCTTG 487527 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || || | ||| ||| |||||||| || || || |||||| Sbjct 487528 GATACAATAGAAAATGTAAAGGCCAAAATCCAGGATAAGGAAGGTGTTCCTCCTGACCAG 487587 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || | ||||||||||| ||||||| | ||| || ||| | | || ||| Sbjct 487588 CAAAGACTGATCGTTGCTGGCAAACAACTGGAAGA-TGGATGTCTTTGACCAACTACAAC 487646 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGAC 31409 |||||||| || || ||||||||||| || || |||| Sbjct 487647 ATTCAAAAGGAGTCCACTCTTCATCTTGTGCTGAGAC 487683 >seq34609 Length=2775773 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||| | ||||| |||||||| || || ||||| | || || || || Sbjct 2545944 AAGATGCAGATTTTCATGAAGACCCTGACAGGGAAGACCATCACTCTTGAGGTCGAGCCC 2545885 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || ||| Sbjct 2545884 TCAGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 2545825 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || | |||||| || ||||||| | | | ||| || || || Sbjct 2545824 CAGCAAAGACTGATCTTTGTTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTA 2545766 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCT 31398 ||||||||||| || || ||||||||||| Sbjct 2545765 CAACATTCAAAAGGAGTCCACTCTTCATCT 2545736 >seq70604 Length=2882449 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || || ||||| | || || | || Sbjct 1789582 AAGATGCAGATTTTCGTGAAGACCCTAACGGGGAAGACCATCACTCTTGAGGTCCAGCCC 1789523 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || ||| Sbjct 1789522 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 1789463 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || ||||||| || ||||||| | | | ||| || || || Sbjct 1789462 CAGCAAAGACTGATCTTTGCTGGCAGGCAACTGGAAGA-TGGACGTACTTTGTCTGACTA 1789404 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 1789403 CAACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 1789362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445335566774400