Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq23781 131 3e-25 >seq23781 Length=1882226 Score = 131 bits (144), Expect = 3e-25 Identities = 361/545 (66%), Gaps = 14/545 (3%) Strand=Plus/Plus Query 35247 TTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCA 35306 ||||||||| ||| ||| |||| || | |||||| |||| ||| || |||| | Sbjct 24865 TTTTCTGGAAAGGTGTTTTGGAGGAGTTGCTGTGGTTTATCAAGGGATCCACCAACGCTA 24924 Query 35307 AAGAATTGGC---CAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTT 35363 | ||| || | |||| | || | | || ||| | || || ||||| || || || | Sbjct 24925 AGGAACTGTCTTCCAAG--GGAGTGAAA-ATTTGGGATGCCAACGGGTCCCGAGACTTCT 24981 Query 35364 TGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCC 35423 |||| | || || | | ||||||| || || |||||||| || || || || |||| Sbjct 24982 TGGATGGCTTGGGCTTCTCCAATAGAGCTGAAGGGGATTTGGGCCCGGTTTATGGCTTCC 25041 Query 35424 AATGGCGTCATTTTGGTGCTGAATAT---GATACCTGTTCTTCCGATTATACTGGAAAGG 35480 | ||| | |||||||| |||||||| |||| || ||| |||||| | || | | Sbjct 25042 AGTGGAGGCATTTTGGGGCTGAATACAAAGATA--TGGA-TTCAGATTATTCAGGTCAAG 25098 Query 35481 GTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGA 35540 | | |||||| || || | | | || | | | || || | | ||||| | Sbjct 25099 GAGTAGATCAACTGCAAAAAGTGATCGACACAATCAAAACCAACCCTAACAACAGAAGAA 25158 Query 35541 TGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACA 35600 | || || || |||||||| | ||||| | || ||||| || || ||||||||| Sbjct 25159 TCATCCTGTGTGCTTGGAATCCAAAAGATCTCCCTCTCATGGCCCTCCCCCCATGCCACG 25218 Query 35601 TGA-CTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGC 35659 |||| || || || |||| ||||| || |||| ||||||||||| || | Sbjct 25219 CCCTCTGC-CAGTTCTACGTGGTGAATGGGGAGCTGTCCTGCCAGTTGTACCAAAGGTCG 25277 Query 35660 GGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTG 35719 ||||| | || |||| ||||||||||||||||| ||| | || || || | || Sbjct 25278 GGAGACATGGGCCTGGGTGTGCCCTTCAATATTGCCAGCTACGCCCTGCTCACCTACATG 25337 Query 35720 ATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACAC 35779 || || || || || || || || || || | | |||||| || || |||||| Sbjct 25338 ATCGCACACATCACGGACCTGAAGCCAGGTGACTTCGTACACACTCTGGGAGATGCACAC 25397 Query 35780 ATTTA 35784 ||||| Sbjct 25398 ATTTA 25402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988603656240600