Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq6427 228 3e-55 >seq6427 Length=47605 Score = 228 bits (252), Expect = 3e-55 Identities = 265/352 (75%), Gaps = 4/352 (1%) Strand=Plus/Plus Query 31764 CGCTTCGTCAGTAGCAGCCAGTCGAGATTTGGCGTGTTGCTGATCAAATCGAAGAGATCG 31823 || ||||||| |||||||||||||||| ||||||| |||||||| || | | || Sbjct 19778 CGTTTCGTCAAAAGCAGCCAGTCGAGATCCGGCGTGTCCCTGATCAATTCCCACAATTCT 19837 Query 31824 ACTCGCCACATCGGATAGACCGCGTTGTCGAACACGTCCGCAAGCGACGAGCAAAAGACG 31883 ||||||| | ||||| || || ||||||||||| ||||| | || || || || ||| Sbjct 19838 GCTCGCCAGAGCGGATCAACGGCATTGTCGAACACATCCGCCAATGAGGAACAGAAAACG 19897 Query 31884 CGCTGGCGCCGGCCGCGGGCGGCGAAGAACTG-TTCG-TGCGCTGCGTTCCACGCGAGCG 31941 |||||||| |||||| ||| | |||||| |||| | ||| || | ||| | ||| Sbjct 19898 CGCTGGCGGCGGCCGTTGGCCGAAAAGAACGCCTTCGCTTCGC-GC-TGCCATCTGCGCG 19955 Query 31942 GCTTGCGCCAGTTTGCGGCTGACGTGCGACGCCGCGGTGCGCCCGGTCCCCAGTTCACGG 32001 | ||| |||||| ||| || || |||||||| ||||| |||||||| ||| | Sbjct 19956 GTTTGAACCAGTTGGCGAGCGATGTCTTGCGCCGCGGCGCGCCTGGTCCCCAATTCGTCG 20015 Query 32002 CCGAGCCGCCAGCGAAGCGTGCATTGCGCGCCTCGGCGTAACAGTGGTCGCATCCCGGAC 32061 | |||||| ||||||| |||||||||||||||||||| |||||||| || || Sbjct 20016 CAATACCGCCACCGAAGCGCTGGTTGCGCGCCTCGGCGTAACAATGGTCGCAGCCAGGCG 20075 Query 32062 CGACCTTCTGGCAACCTTCCCACGGGTTGAACGTGTGGTCGCACCATTCGAT 32113 ||||||||||| || |||||||| || ||||||||||||||||| || || Sbjct 20076 AAACCTTCTGGCATCCCTCCCACGGATTAAACGTGTGGTCGCACCACTCAAT 20127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170515293236400