Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq39341 172 7e-38 seq36501 134 2e-26 seq29163 123 3e-23 seq41210 102 1e-16 seq26065 98.7 1e-15 seq65209 95.1 2e-14 seq6493 82.4 1e-10 >seq39341 Length=970188 Score = 172 bits (190), Expect = 7e-38 Identities = 205/278 (74%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 188378 GGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATCTG 188437 |||||| | || ||||||| | |||||||| |||||||||| |||||||| || | Sbjct 591537 GGATCTTTTGGTCTGATTTTAGACATGACTTTAAACAGACATAAGCATCCCCTTAACCCA 591478 Query 188438 TACCTACTTTGTGGATTTACACTGTTAGAATCTCTAACGCTGGCCTCTGTTGTTACTTTC 188497 ||||| |||| || ||||| |||||| ||| | || || |||||| ||||||||||| Sbjct 591477 TACCTGCTTTTTGTATTTATACTGTTGGAAGCGCTGACTGTGGCCTTCATTGTTACTTTC 591418 Query 188498 TATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTTCTTGCTCTG 188557 | ||||| ||| || | |||| ||| || |||| |||||| |||| || | Sbjct 591417 TGTGATGTATATATTGTCCTGCAAGATTTTATACTGACCCATGCAGTATTTCCTGATTCA 591358 Query 188558 ACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGGATTGTTTGCT 188617 ||| | |||||| ||||| |||||||||| | | ||| ||| | |||| | ||| || Sbjct 591357 ACTGTGTATACTCTGCAATCTAAGAGAGATTGCGGCAAATTTGGAGCAGGCCTATTTTCT 591298 Query 188618 GCTTTCTGGATTTTAATTTTGTCAGGAGTCTTGAGGAT 188655 | ||| |||||||| | ||||||||| |||| | ||| Sbjct 591297 GGTTTGTGGATTTTGTTCTTGTCAGGAATCTTAAAGAT 591260 >seq36501 Length=2370580 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 2290869 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 2290810 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 2290809 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 2290750 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 2290749 CTGTTTCTTATACCATA 2290733 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| || | || || || || | ||| || || || || || || | Sbjct 2286200 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 2286141 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||||||||||||||||| |||||| | || || || || || ||||| || | Sbjct 2286140 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 2286081 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | |||||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 2286080 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGCACCCCAATTCCAATGGGGCGATGGC 2286021 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 2286020 GTTTATTCGA 2286011 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| |||| ||| || ||||| ||||| | || || | ||| || || || || || | Sbjct 2267071 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 2267012 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 |||||||||| || || | ||||| | || || ||| | || || |||| ||| |||| Sbjct 2267011 TGGCATAATCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 2266952 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 ||| || || || || ||| | |||| ||||| || || ||||| Sbjct 2266951 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 2266906 >seq29163 Length=2664742 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| ||||| | ||| || ||||||||||| || ||||| || || || || | Sbjct 301517 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 301458 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || |||||||||||||| ||||| ||||||||||||| Sbjct 301457 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 301398 Query 33724 C 33724 | Sbjct 301397 C 301397 Score = 111 bits (122), Expect = 2e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 299832 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 299773 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || || || || |||||||| | ||||||||||||||| |||||| Sbjct 299772 AATTTGGAAGCCATAGAAACAACGAGCCTCGGTAATCTGAACTTCT 299727 >seq41210 Length=1057567 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| | | | || | ||||||||||| ||||| |||||| ||| Sbjct 212667 GTTACTTTCTATGATGTGTATGTTGTCCTGCAAGCTTTCATACTGACTTGTGCAGTATTT 212726 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| || |||| |||| || |||||||||||||| ||| ||| | |||| Sbjct 212727 CTTGGTTTGACTGTATATACTTTACAGTCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 212785 Score = 100 bits (110), Expect = 4e-16 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 ||||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||| Sbjct 201501 TGCTCCTCCATCGAGGACGACTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGCGTGCAC 201560 Query 188232 ATACGAATGG 188241 || ||||||| Sbjct 201561 ATCCGAATGG 201570 >seq26065 Length=1373002 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | || || ||||| |||||||| ||||| || || | || || Sbjct 1017726 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 1017667 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 1017666 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 1017608 Score = 82.4 bits (90), Expect = 1e-10 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 || ||||| ||||||| || ||||||| ||||| |||||||| ||||| |||||| | Sbjct 1007479 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGCTTATACATTTTCCAAATGTCAGGG 1007420 Query 34140 TATTGGATTGGGAAAATAACAAA 34162 || ||||||||||| || ||||| Sbjct 1007419 TACTGGATTGGGAAGATGACAAA 1007397 >seq65209 Length=3338390 Score = 95.1 bits (104), Expect = 2e-14 Identities = 151/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 31338 ATCTAGAGATTGTACTTCTTCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGC 31397 ||||| | ||| ||||| || | |||||| ||| |||| |||| | | || |||| || Sbjct 2239533 ATCTAAAATTTGAACTTCCTCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTATGC 2239592 Query 31398 TATTCTATCTCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCC 31457 ||| ||| || | || || | |||| | ||| ||| ||||| || | || || Sbjct 2239593 AGTTCGATCACCCTTTTTGACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACC 2239652 Query 31458 TATGTTTCCCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAG 31514 | ||||| ||||||||||| ||||| ||||| |||||| ||| || | |||| Sbjct 2239653 AACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGC 2239712 Query 31515 GGACAGACCAGACCTAGGAGCTATTCTACCATAGCA 31550 | || ||||| | |||||| | ||| |||||||| Sbjct 2239713 TGCCAAGCCAGAACGAGGAGCCACTCTTCCATAGCA 2239748 >seq6493 Length=163338 Score = 82.4 bits (90), Expect = 1e-10 Identities = 174/257 (68%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 31299 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 31356 ||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| ||||| Sbjct 143063 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTC--ATCTAAAATTTGAACTTCC 143120 Query 31357 TCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31416 || | |||||| ||| |||| | || | | || ||||| || |||| ||| || | || Sbjct 143121 TCTATTTCTGGGTAAAATATCCATTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 143180 Query 31417 ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 31476 || | |||| | ||| ||| ||||| || | || || | ||| | ||||||||| Sbjct 143181 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTACTCTATAATCT 143240 Query 31477 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 31533 || ||||| ||||| || ||| ||| || | |||| | || | ||| | |||| Sbjct 143241 TCATCTATGACACCAGCTTCTACATCTATGAAGTGTTTTGTTGCCAAGCTAGAACGAGGA 143300 Query 31534 GCTATTCTACCATAGCA 31550 || ||| |||||||| Sbjct 143301 GCCGCTCTTCCATAGCA 143317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629208881289600