Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq26065 114 1e-20
seq36501 102 8e-17
>seq26065
Length=1373002
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| ||||| || || || ||||| ||||| || | ||| ||||| | ||||| ||| |
Sbjct 1017728 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 1017669
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| |
Sbjct 1017668 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1017609
Query 11772 CTACTACTCTTTCTCC 11787
| || || ||||| ||
Sbjct 1017608 CCACCACCCTTTCCCC 1017593
Score = 84.2 bits (92), Expect = 2e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949
|||||| | || || ||||||| ||||| ||||| ||||| |||| ||| || ||
Sbjct 1013401 ATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAGTGAACATTCTCAATGAG 1013342
Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995
|||||||| ||||||||||| || ||||||| | |||||| |||
Sbjct 1013341 AATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGTACTTCC 1013296
>seq36501
Length=2370580
Score = 102 bits (112), Expect = 8e-17
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || || ||||| | || || || || || ||||| |||||||||
Sbjct 2290869 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 2290810
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | ||||| |||| || || ||||||||||| || || || || |
Sbjct 2290809 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 2290750
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 2290749 CTGTTTCTTATACCAT 2290734
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468071970780800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |