Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq39341 214 2e-50 seq41210 196 6e-45 seq36501 140 4e-28 seq29163 123 3e-23 seq26065 102 1e-16 seq65209 86.0 8e-12 >seq39341 Length=970188 Score = 214 bits (236), Expect = 2e-50 Identities = 237/316 (75%), Gaps = 0/316 (0%) Strand=Plus/Plus Query 9392 AGCAGACAGGACCAGCTCCACTGTTTCACTTTGCACAAATATCCTCAAAAGTCCTGACAA 9451 || || || |||||||| ||| ||||||| | ||| ||| | || | ||||||||| Sbjct 591220 AGAAGCCACGACCAGCTGCACAGTTTCACCATAACAAAACATCTTTAAGATTCCTGACAA 591279 Query 9452 AATTAAAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGA 9511 | |||||||||||| | ||| | |||||||||| ||| | | |||||||||| || Sbjct 591280 GAACAAAATCCACAAACCAGAAAATAGGCCTGCTCCAAATTTGCCGCAATCTCTCTTAGA 591339 Query 9512 TTGTAGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCAT 9571 ||| |||||||| |||| | || |||| |||||| ||||| || ||| |||||| Sbjct 591340 TTGCAGAGTATACACAGTTGAATCAGGAAATACTGCATGGGTCAGTATAAAATCTTGCAG 591399 Query 9572 AACGACATGCACATCATAGAAAGTAACAACAGAGGCCAGCGTTAGAGATTCCGACAGTGT 9631 || | || |||||| |||||||||||| |||||| || || | |||| ||||| | Sbjct 591400 GACAATATATACATCACAGAAAGTAACAATGAAGGCCACAGTCAGCGCTTCCAACAGTAT 591459 Query 9632 AAATCCACAAAGCAGGTATAAATTCAGGGGATGTTTATGTCTGTGTAAAGTCAATGCGAA 9691 |||| || ||||||||||| || |||||||| |||||||||| |||||||| | || Sbjct 591460 AAATACAAAAAGCAGGTATGGGTTAAGGGGATGCTTATGTCTGTTTAAAGTCATGTCTAA 591519 Query 9692 AATCAAGCCTATAGAT 9707 ||||| || | |||| Sbjct 591520 AATCAGACCAAAAGAT 591535 Score = 107 bits (118), Expect = 3e-18 Identities = 129/170 (76%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 9230 TTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAA 9289 ||||| |||| | ||||||||| || || || || || || || |||| ||||||||| Sbjct 590829 TTTCT-ATTAATTGCTTCCAAAATTTGCAA-AGGTGTAA-AAGAGGTTGAGGATATCCAA 590885 Query 9290 GTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTG 9349 ||| | |||||| ||||||| ||| || ||||| || ||| || || ||||||| Sbjct 590886 GTAAAGGCTGATAGCAGCTAACATATATTCCTCAGGTGACAGCCTAAC-ATCAGTGAGTA 590944 Query 9350 CGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACA 9399 ||||||||||| ||||||| |||| | | |||||| || | ||||| || Sbjct 590945 TGTGTCATAGATGATGAATCTGCAGGAAAGAAGGGCTCCTACAGCAGCCA 590994 >seq41210 Length=1057567 Score = 196 bits (216), Expect = 6e-45 Identities = 158/191 (83%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||||| | ||||||| |||||||| |||||||||||||||||| Sbjct 215793 TTTTTATTAACTGCTTCCAAAACCCGTAACAGGTGCAAGAAGAGATTGATGATATCCAAG 215734 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| ||||| | ||||| ||||| |||||||| || ||| | || || |||||||| Sbjct 215733 TAGAGGTTGATGGCAGCTAATACATACTCTTCAGGTGACAGCCTGTGCATCAGTGAGTGT 215674 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 ||||||||||| |||||||||||||| | |||||| || ||||| || ||||| |||| Sbjct 215673 GTGTCATAGATGATGAATCCGCAGAAAAGAAGGGCTCCCCCAGCAGCCAAGACCAACTCC 215614 Query 9411 ACTGTTTCACT 9421 ||||| ||||| Sbjct 215613 ACTGTCTCACT 215603 Score = 143 bits (158), Expect = 4e-29 Identities = 103/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| || |||| ||||||| |||||| | ||||| Sbjct 212785 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGACTGTAAAGTATATACAGTCAAACCAAGA 212726 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||| |||||| ||||||||||||| || |||| |||||||||||||||||| Sbjct 212725 AATACTGCACAAGTCAGTATGAAAGCTTGCAGGACAACATACACATCATAGAAAGTAAC 212667 Score = 104 bits (114), Expect = 3e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||||||| Sbjct 201570 CCATTCGGATGTGCACGCTGGCGGAGGCCACGCAGCTGCCATAGTTGAAGTCGTCCTCGA 201511 Query 9907 TGGAGGAGCACGCGTAGAGG 9926 |||||||||| | |||| || Sbjct 201510 TGGAGGAGCAGGGGTAGCGG 201491 >seq36501 Length=2370580 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 2290869 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 2290810 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 2290809 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 2290750 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 2290749 CTGTTTCTTATACCATA 2290733 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| || ||||||||||| | || || ||||| || || || || | | Sbjct 2267071 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 2267012 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 |||||||||| || || | ||||| | || || ||| | || || |||| ||| |||| Sbjct 2267011 TGGCATAATCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 2266952 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 2266951 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 2266906 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 2286200 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 2286141 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||||||||| ||||||| |||||| | || || || | || ||||| || | Sbjct 2286140 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 2286081 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 2286080 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGCACCCCAATTCCAATGGGGCGATGGC 2286021 Query 65599 TCTTATTAGA 65608 ||||| || Sbjct 2286020 GTTTATTCGA 2286011 >seq29163 Length=2664742 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| ||||| | ||| |||||||||||||| || ||||| || || || || | Sbjct 301517 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 301458 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| |||||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 301457 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 301398 Query 36300 C 36300 | Sbjct 301397 C 301397 Score = 114 bits (126), Expect = 2e-20 Identities = 89/106 (84%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 299832 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 299773 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 ||||| || || |||||||| | ||||||||||||||| |||||| Sbjct 299772 AATTTGGAAGCCATAGAAACAACGAGCCTCGGTAATCTGAACTTCT 299727 >seq26065 Length=1373002 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | || |||||||| |||||||| ||||| || || | || || Sbjct 1017726 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 1017667 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 1017666 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 1017608 >seq65209 Length=3338390 Score = 86.0 bits (94), Expect = 8e-12 Identities = 149/216 (69%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 33939 ATCTAGAGATTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGC 33998 ||||| | ||| ||||| | | |||||| ||| |||| |||| | | || |||| || Sbjct 2239533 ATCTAAAATTTGAACTTCCTCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTATGC 2239592 Query 33999 TATTCTATCCCCCGTATTTACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCC 34058 ||| ||| ||| | || || | || | ||| ||| ||||| || | || || Sbjct 2239593 AGTTCGATCACCCTTTTTGACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACC 2239652 Query 34059 TATATTTCCCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---ACCTTTTAG 34115 | |||||| ||||||||||| ||||| ||||| |||||| ||| || |||| Sbjct 2239653 AACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGC 2239712 Query 34116 GGACAGACCAGACCTAGGAGCTATTCTACCATAGCA 34151 | || ||||| | |||||| | ||| |||||||| Sbjct 2239713 TGCCAAGCCAGAACGAGGAGCCACTCTTCCATAGCA 2239748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657536675988800