Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq23781 316 2e-81
seq66935 134 1e-26
seq34278 134 1e-26
seq70150 96.9 3e-15
>seq23781
Length=1882226
Score = 316 bits (350), Expect = 2e-81
Identities = 477/678 (70%), Gaps = 0/678 (0%)
Strand=Plus/Minus
Query 20913 AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGC 20972
|||||| | ||| || || | ||| || ||||| ||| || || |||| |||||
Sbjct 25435 AGCTGAGTCTTCAGTGGCTCGATGTGATTCAGGTAAATGTGTGCATCTCCCAGAGTGTGT 25376
Query 20973 ACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAG 21032
|| ||||| || || ||||| |||||| ||| ||||||| || || || |||||||||
Sbjct 25375 ACGAAGTCACCTGGCTTCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAG 25316
Query 21033 CTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092
||||| || || || || || || ||||||||||| | ||||| ||||||| |||||||
Sbjct 25315 CTGGCAATATTGAAGGGCACACCCAGGCCCATGTCTCCCGACCTTTGGTACAACTGGCAG 25256
Query 21093 GACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152
||||||||||| ||||||| ||||| || | |||| || || ||||| |||||
Sbjct 25255 GACAGCTCCCCATTCACCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATG 25196
Query 21153 CGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTG 21212
| | ||| || || ||||| || |||| | ||| | | | || || |
Sbjct 25195 AGAGGGAGATCTTTTGGATTCCAAGCACACAGGATGATTCTTCTGTTGTTAGGGTTGGTT 25136
Query 21213 TTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCG 21272
|| ||| || | ||| | |||| || || || || ||||| || | | ||
Sbjct 25135 TTGATTGTGTCGATCACTTTTTGCAGTTGATCTACTCCTTGACCTGAATAATCTGAATCC 25076
Query 21273 GCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCG 21332
| |||| || ||||||||||| ||||||||||| || || ||||| |||| |||
Sbjct 25075 ATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATCC 25016
Query 21333 CCCTCGCGGCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCC 21392
|| || | | ||||||| | |||| ||| | |||||||||| || |||
Sbjct 25015 CCTTCAGCTCTATTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCC 24956
Query 21393 CAAATTTTTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCAC 21452
|||||||| || || | |||||||| | | || |||||| ||| |||||||||||
Sbjct 24955 CAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCCCTTGATAAACCAC 24896
Query 21453 AGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCG 21512
||||||||||||| || || |||| || || | |||||| || | ||||||||| ||
Sbjct 24895 AGCAACTCCTCCAAAACACCTTTCCAGAAAACACGTTTGGTTGTCAGCAGAGGAAATTCA 24836
Query 21513 TCCCTGAGGTTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTG 21572
|| || ||||| || || ||||| | ||||||||| ||| |||||| ||| || | |
Sbjct 24835 TCTCTCAGGTTGTACCGCGCCTGCATCCCGAACACCGACAGGGTGCCAGTGCCGGTGCGG 24776
Query 21573 TCCTCCCTCTGCACGCCG 21590
|| ||| || | | ||||
Sbjct 24775 TCATCCTTCCGGAAGCCG 24758
>seq66935
Length=8519
Score = 134 bits (148), Expect = 1e-26
Identities = 139/182 (76%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048
||||| |||||| ||| ||||||| || || || |||||||||||||| || || || |
Sbjct 2436 TCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAGG 2495
Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108
| || || ||||||||||| | |||| ||||||| ||||||||||||||||||
Sbjct 2496 GCACACCCAGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCA 2555
Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGG 21168
||||||| ||||| || | |||| || || ||||| ||||| | | ||| || | ||
Sbjct 2556 CCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATCTGAGG 2615
Query 21169 GG 21170
||
Sbjct 2616 GG 2617
Score = 84.2 bits (92), Expect = 2e-11
Identities = 115/161 (71%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 21280 TGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGC 21339
|||| || ||||||||||| ||||||||||| || || ||||| |||| ||| || ||
Sbjct 4813 TGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATCCCCTTCAG 4872
Query 21340 GGCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTT 21399
| | ||||||| | |||| ||| | |||||||||| || ||||||||||
Sbjct 4873 CTCTATTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATTT 4932
Query 21400 TTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCC 21440
| || || | |||||||| | | || |||||| |||
Sbjct 4933 TCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCCC 4973
>seq34278
Length=4487281
Score = 134 bits (148), Expect = 1e-26
Identities = 139/182 (76%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048
||||| |||||| ||| ||||||| || || || |||||||||||||| || || || |
Sbjct 3963274 TCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAGG 3963333
Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108
| || || ||||||||||| | |||| ||||||| ||||||||||||||||||
Sbjct 3963334 GCACACCCAGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCA 3963393
Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGG 21168
||||||| ||||| || | |||| || || ||||| ||||| | | ||| || | ||
Sbjct 3963394 CCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATCTGAGG 3963453
Query 21169 GG 21170
||
Sbjct 3963454 GG 3963455
Score = 84.2 bits (92), Expect = 2e-11
Identities = 115/161 (71%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 21280 TGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGC 21339
|||| || ||||||||||| ||||||||||| || || ||||| |||| ||| || ||
Sbjct 3965651 TGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATCCCCTTCAG 3965710
Query 21340 GGCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTT 21399
| | ||||||| | |||| ||| | |||||||||| || ||||||||||
Sbjct 3965711 CTCTATTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATTT 3965770
Query 21400 TTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCC 21440
| || || | |||||||| | | || |||||| |||
Sbjct 3965771 TCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCCC 3965811
>seq70150
Length=2088832
Score = 96.9 bits (106), Expect = 3e-15
Identities = 218/325 (67%), Gaps = 2/325 (1%)
Strand=Plus/Minus
Query 2890 CTCATAAACAGATTTTCCTCCAATAACCCAGACCGTGTTTAATTGTTCTTTTAGTT-TGT 2948
|| ||||||||| | ||||| | | ||| ||| ||| || || | | ||| || ||
Sbjct 228818 CTTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTTTATTTGTTAATTCTGG 228759
Query 2949 ATTGTCTATAGAAATTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCG 3008
|| || || | | || ||||| || | || | || ||||| || ||||| | |
Sbjct 228758 ATCTTCAGTA-AGTTCTAAGGCATCATCCAAACTTTTGGCAAGAAAATGAGCTCCCTTTG 228700
Query 3009 GTGGTTCACGTAATTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCT 3068
| ||||| | |||||| || | || ||||||||||||| || | ||| || ||||
Sbjct 228699 GAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCATTAAAGGTCGATTCT 228640
Query 3069 TTTCAGGGATGGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAA 3128
| || || ||||| ||||| || | | |||||||| |||| ||||| || | || |
Sbjct 228639 TCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTAGCTTCTT 228580
Query 3129 CCGATGGCGTAGACGTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAG 3188
| || | | | |||||| | || |||||| | | ||| || || || ||||| |
Sbjct 228579 CTGAAGAGATTGTAGTCATTCTTTGGAAATACTTGAATTCATTCCTGAGTGGTGGCCAGG 228520
Query 3189 GCATTGTTCCGTTTTTACCAATTCC 3213
||| | ||||| || || || ||
Sbjct 228519 GCAGGTTCCCGTTCTTGCCGATGCC 228495
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427372890633600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |