Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq23781 316 2e-81 seq66935 134 1e-26 seq34278 134 1e-26 seq70150 96.9 3e-15 >seq23781 Length=1882226 Score = 316 bits (350), Expect = 2e-81 Identities = 477/678 (70%), Gaps = 0/678 (0%) Strand=Plus/Minus Query 20913 AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGC 20972 |||||| | ||| || || | ||| || ||||| ||| || || |||| ||||| Sbjct 25435 AGCTGAGTCTTCAGTGGCTCGATGTGATTCAGGTAAATGTGTGCATCTCCCAGAGTGTGT 25376 Query 20973 ACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAG 21032 || ||||| || || ||||| |||||| ||| ||||||| || || || ||||||||| Sbjct 25375 ACGAAGTCACCTGGCTTCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAG 25316 Query 21033 CTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092 ||||| || || || || || || ||||||||||| | ||||| ||||||| ||||||| Sbjct 25315 CTGGCAATATTGAAGGGCACACCCAGGCCCATGTCTCCCGACCTTTGGTACAACTGGCAG 25256 Query 21093 GACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 ||||||||||| ||||||| ||||| || | |||| || || ||||| ||||| Sbjct 25255 GACAGCTCCCCATTCACCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATG 25196 Query 21153 CGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTG 21212 | | ||| || || ||||| || |||| | ||| | | | || || | Sbjct 25195 AGAGGGAGATCTTTTGGATTCCAAGCACACAGGATGATTCTTCTGTTGTTAGGGTTGGTT 25136 Query 21213 TTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCG 21272 || ||| || | ||| | |||| || || || || ||||| || | | || Sbjct 25135 TTGATTGTGTCGATCACTTTTTGCAGTTGATCTACTCCTTGACCTGAATAATCTGAATCC 25076 Query 21273 GCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCG 21332 | |||| || ||||||||||| ||||||||||| || || ||||| |||| ||| Sbjct 25075 ATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATCC 25016 Query 21333 CCCTCGCGGCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCC 21392 || || | | ||||||| | |||| ||| | |||||||||| || ||| Sbjct 25015 CCTTCAGCTCTATTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCC 24956 Query 21393 CAAATTTTTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCAC 21452 |||||||| || || | |||||||| | | || |||||| ||| ||||||||||| Sbjct 24955 CAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCCCTTGATAAACCAC 24896 Query 21453 AGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCG 21512 ||||||||||||| || || |||| || || | |||||| || | ||||||||| || Sbjct 24895 AGCAACTCCTCCAAAACACCTTTCCAGAAAACACGTTTGGTTGTCAGCAGAGGAAATTCA 24836 Query 21513 TCCCTGAGGTTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTG 21572 || || ||||| || || ||||| | ||||||||| ||| |||||| ||| || | | Sbjct 24835 TCTCTCAGGTTGTACCGCGCCTGCATCCCGAACACCGACAGGGTGCCAGTGCCGGTGCGG 24776 Query 21573 TCCTCCCTCTGCACGCCG 21590 || ||| || | | |||| Sbjct 24775 TCATCCTTCCGGAAGCCG 24758 >seq66935 Length=8519 Score = 134 bits (148), Expect = 1e-26 Identities = 139/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||| |||||| ||| ||||||| || || || |||||||||||||| || || || | Sbjct 2436 TCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAGG 2495 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | |||| ||||||| |||||||||||||||||| Sbjct 2496 GCACACCCAGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCA 2555 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGG 21168 ||||||| ||||| || | |||| || || ||||| ||||| | | ||| || | || Sbjct 2556 CCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATCTGAGG 2615 Query 21169 GG 21170 || Sbjct 2616 GG 2617 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 21280 TGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGC 21339 |||| || ||||||||||| ||||||||||| || || ||||| |||| ||| || || Sbjct 4813 TGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATCCCCTTCAG 4872 Query 21340 GGCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTT 21399 | | ||||||| | |||| ||| | |||||||||| || |||||||||| Sbjct 4873 CTCTATTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATTT 4932 Query 21400 TTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCC 21440 | || || | |||||||| | | || |||||| ||| Sbjct 4933 TCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCCC 4973 >seq34278 Length=4487281 Score = 134 bits (148), Expect = 1e-26 Identities = 139/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||| |||||| ||| ||||||| || || || |||||||||||||| || || || | Sbjct 3963274 TCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAGG 3963333 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | |||| ||||||| |||||||||||||||||| Sbjct 3963334 GCACACCCAGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCA 3963393 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGG 21168 ||||||| ||||| || | |||| || || ||||| ||||| | | ||| || | || Sbjct 3963394 CCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATCTGAGG 3963453 Query 21169 GG 21170 || Sbjct 3963454 GG 3963455 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 21280 TGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGC 21339 |||| || ||||||||||| ||||||||||| || || ||||| |||| ||| || || Sbjct 3965651 TGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATCCCCTTCAG 3965710 Query 21340 GGCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTT 21399 | | ||||||| | |||| ||| | |||||||||| || |||||||||| Sbjct 3965711 CTCTATTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATTT 3965770 Query 21400 TTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCC 21440 | || || | |||||||| | | || |||||| ||| Sbjct 3965771 TCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCCC 3965811 >seq70150 Length=2088832 Score = 96.9 bits (106), Expect = 3e-15 Identities = 218/325 (67%), Gaps = 2/325 (1%) Strand=Plus/Minus Query 2890 CTCATAAACAGATTTTCCTCCAATAACCCAGACCGTGTTTAATTGTTCTTTTAGTT-TGT 2948 || ||||||||| | ||||| | | ||| ||| ||| || || | | ||| || || Sbjct 228818 CTTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTTTATTTGTTAATTCTGG 228759 Query 2949 ATTGTCTATAGAAATTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCG 3008 || || || | | || ||||| || | || | || ||||| || ||||| | | Sbjct 228758 ATCTTCAGTA-AGTTCTAAGGCATCATCCAAACTTTTGGCAAGAAAATGAGCTCCCTTTG 228700 Query 3009 GTGGTTCACGTAATTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCT 3068 | ||||| | |||||| || | || ||||||||||||| || | ||| || |||| Sbjct 228699 GAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCATTAAAGGTCGATTCT 228640 Query 3069 TTTCAGGGATGGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAA 3128 | || || ||||| ||||| || | | |||||||| |||| ||||| || | || | Sbjct 228639 TCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTAGCTTCTT 228580 Query 3129 CCGATGGCGTAGACGTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAG 3188 | || | | | |||||| | || |||||| | | ||| || || || ||||| | Sbjct 228579 CTGAAGAGATTGTAGTCATTCTTTGGAAATACTTGAATTCATTCCTGAGTGGTGGCCAGG 228520 Query 3189 GCATTGTTCCGTTTTTACCAATTCC 3213 ||| | ||||| || || || || Sbjct 228519 GCAGGTTCCCGTTCTTGCCGATGCC 228495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427372890633600