Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq75383 105 7e-18
seq33366 104 2e-17
seq70604 91.5 1e-13
seq34609 91.5 1e-13
seq42836 84.2 2e-11
seq25926 84.2 2e-11
>seq75383
Length=1910755
Score = 105 bits (116), Expect = 7e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606
|| |||| || | ||| | || ||||| || || ||||| || || || |||| |
Sbjct 170135 AAGCGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 170076
Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666
||||| |||||||| || ||| ||||||| | ||||| || || || ||||| |||
Sbjct 170075 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCT 170016
Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726
||||| ||| || || | | || | ||||| ||||||||||||| | |||
Sbjct 170015 TTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 169956
Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
| |||||||| ||||| || || ||||| || |||||
Sbjct 169955 ATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169918
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| || || ||||| || || || |||| | ||||| |||||||| ||
Sbjct 169202 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 169143
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| ||||||| | ||||| || || || ||||| |||||||| ||| || ||
Sbjct 169142 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 169083
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||||||||| | ||| | |||||||| ||||| ||
Sbjct 169082 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTC 169023
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 169022 TTCACGAAGATCTGCAT 169006
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| || || ||||| || || || |||| | ||||| |||||||| ||
Sbjct 169430 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 169371
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| ||||||| | ||||| || || || ||||| |||||||| ||| || ||
Sbjct 169370 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 169311
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||||||||| | ||| | |||||||| ||||| ||
Sbjct 169310 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTC 169251
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 169250 TTCACGAAGATCTGCAT 169234
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| || || ||||| || || || |||| | ||||| |||||||| ||
Sbjct 169658 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 169599
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| ||||||| | ||||| || || || ||||| |||||||| ||| || ||
Sbjct 169598 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 169539
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||||||||| | ||| | |||||||| ||||| ||
Sbjct 169538 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTC 169479
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 169478 TTCACGAAGATCTGCAT 169462
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| || || ||||| || || || |||| | ||||| |||||||| ||
Sbjct 169886 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 169827
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| ||||||| | ||||| || || || ||||| |||||||| ||| || ||
Sbjct 169826 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 169767
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||||||||| | ||| | |||||||| ||||| ||
Sbjct 169766 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTC 169707
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 169706 TTCACGAAGATCTGCAT 169690
>seq33366
Length=1752596
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| |||||||| |||||||| ||||| | |||| ||||| ||||| || ||
Sbjct 780144 GTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 780085
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||| || | ||||| || || || |||||||| || || ||| || ||
Sbjct 780084 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 780025
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||||||||| | ||| | ||||||||||||| |||
Sbjct 780024 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTT 779965
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| ||||||||
Sbjct 779964 TTCACGAAGATTTGCAT 779948
>seq70604
Length=2882449
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGT 139610
||| |||| |||| || ||||| ||||||||||| || || || || | || | |
Sbjct 1789367 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-T 1789425
Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670
|||| || || | |||||| ||||||| | |||||| || ||||| || ||||| || |
Sbjct 1789426 CTTCCAGTTGCCTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTAT 1789485
Query 139671 CGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730
| ||| || |||| | ||| | ||| || | ||||| ||||||| || | |
Sbjct 1789486 CCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTGGACCTCAAGAGTGATGG 1789545
Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| || || | || || ||||| || |||||
Sbjct 1789546 TCTTCCCCGTTAGGGTCTTCACGAAAATCTGCAT 1789579
>seq34609
Length=2775773
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620
|||| || ||||| ||||||||||| || || || || | || | ||||| || ||
Sbjct 2545739 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-TCTTCCAGTTG 2545797
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
|| ||| || ||||||| | |||||| || ||||| || ||||| || || ||| ||
Sbjct 2545798 CTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTT 2545857
Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
|||| | ||| | ||| || | |||||| ||||||| || | ||||| || ||
Sbjct 2545858 GGCCTTTACATTTTCTATTGTATCTGAGGGCTCGACCTCAAGAGTGATGGTCTTCCCTGT 2545917
Query 139741 CAACGTTTTTACGAATATTTGCAT 139764
|| || || | ||| || |||||
Sbjct 2545918 CAGGGTCTTCATGAAAATCTGCAT 2545941
>seq42836
Length=1893264
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/215 (70%), Gaps = 3/215 (1%)
Strand=Plus/Minus
Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGT 139610
||| ||||| |||| || ||||| ||||||||||| || || || || | || | |
Sbjct 1011597 CAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-T 1011539
Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670
|||| | || || |||||| ||||||| | |||||| || ||||| || ||||| || |
Sbjct 1011538 CTTCCACTTGCTTCCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTAT 1011479
Query 139671 CGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730
| ||| || ||| | ||| | ||| || | |||||| |||| | || | |
Sbjct 1011478 CCTGGATCTTGACCATTACATCTTCTATTGTTTCCGAGGGCTCGACCTTGAGAGTGATGG 1011419
Query 139731 TCTTGCCGGTCAA-CGTTTTTACGAATATTTGCAT 139764
|||| || ||||| || || || || || |||||
Sbjct 1011418 TCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCAT 1011384
>seq25926
Length=4460019
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626
|| ||||| ||||||||||| | || || || | || | ||||| || || || ||
Sbjct 2859500 GTGGACTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCA-TCTTCCAGTTGCTTGCC 2859558
Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686
|||| ||||||| | |||||| || ||||| || ||||| || || ||| || ||
Sbjct 2859559 AGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTT 2859618
Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
|| | ||| ||| || | |||||| ||||||| || | ||||| | |||| ||
Sbjct 2859619 TACATTTTCTGTTGTATCCGAGGGCTCGACCTCAAGAGTGATGGTCTTCCTCGTCAGGGT 2859678
Query 139747 TTTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 2859679 CTTCACGAAAATCTGCAT 2859696
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495584554144000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |