Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq29163 134 2e-26
seq36501 131 2e-25
seq65209 116 5e-21
seq6493 102 1e-16
seq26065 98.7 1e-15
>seq29163
Length=2664742
Score = 134 bits (148), Expect = 2e-26
Identities = 104/124 (84%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||||||||| ||||| ||||| |||||||||||||| || ||||| || || || || |
Sbjct 301517 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 301458
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||| ||||| |||||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct 301457 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 301398
Query 50102 CAAC 50105
| ||
Sbjct 301397 CTAC 301394
Score = 111 bits (122), Expect = 2e-19
Identities = 88/106 (83%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279
|||||||| ||||| || || | |||||||||||||| ||||| |||||||| |||||
Sbjct 299832 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 299773
Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325
|| || || || |||||||| | ||||||||||||||| ||||||
Sbjct 299772 AATTTGGAAGCCATAGAAACAACGAGCCTCGGTAATCTGAACTTCT 299727
>seq36501
Length=2370580
Score = 131 bits (144), Expect = 2e-25
Identities = 111/137 (81%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119
|| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |
Sbjct 2290869 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 2290810
Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179
|| |||||||||||||| || ||||||||||| || || ||||| || || | | ||||
Sbjct 2290809 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 2290750
Query 79180 CTATTTCTAAGACCGTA 79196
|| ||||| | ||| ||
Sbjct 2290749 CTGTTTCTTATACCATA 2290733
Score = 96.9 bits (106), Expect = 5e-15
Identities = 121/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737
|||| |||| ||| || ||||| ||||| | || || ||||| || || || || | |
Sbjct 2267071 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 2267012
Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797
|||||||||| || || | ||||| | || || ||| | || || |||| ||| ||||
Sbjct 2267011 TGGCATAATCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 2266952
Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843
||| || || || || ||| | |||| |||||||| || |||||
Sbjct 2266951 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 2266906
Score = 96.9 bits (106), Expect = 5e-15
Identities = 134/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359
|| |||||||| || || | || | ||| | ||||| || || || || ||||| |||
Sbjct 2286198 TAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCATAA 2286139
Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419
||||||||||| || |||| |||||| | || || ||| | || ||||| || ||
Sbjct 2286138 TAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGTAC 2286079
Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479
| | |||||||| || ||||| | ||||| || ||||| || || || | ||| |
Sbjct 2286078 CTCATCAGAATAAAAGCATCTGCCAGACCTTGCACCCCAATTCCAATGGGGCGATGGCGT 2286019
Query 79480 TTATTAGA 79487
||||| ||
Sbjct 2286018 TTATTCGA 2286011
>seq65209
Length=3338390
Score = 116 bits (128), Expect = 5e-21
Identities = 179/255 (70%), Gaps = 3/255 (1%)
Strand=Plus/Plus
Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762
|||||| || ||||| ||| | || || || || ||||| | ||| ||||||||
Sbjct 2239494 TCCAGTGGAACCAAAGCCTCCGGAACCCCTTTCAGTGTCATCTAAAATTTGAACTTCCTC 2239553
Query 47763 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822
| |||||| ||| |||| |||| | | || |||| || ||| ||| ||| | || ||
Sbjct 2239554 TATTTCTGGGTAAAATATCCGTTCACAAATGAGCTATGCAGTTCGATCACCCTTTTTGAC 2239613
Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882
| ||| | ||| ||| ||||| || | || || | ||||| |||||||||||
Sbjct 2239614 TTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCTTC 2239673
Query 47883 GTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGAGC 47939
||||| |||||| |||||| ||| || | |||| || || ||||| | ||||||
Sbjct 2239674 ATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCTGCCAAGCCAGAACGAGGAGC 2239733
Query 47940 TATTCTACCATAGCA 47954
| ||| ||||||||
Sbjct 2239734 CACTCTTCCATAGCA 2239748
>seq6493
Length=163338
Score = 102 bits (112), Expect = 1e-16
Identities = 176/255 (69%), Gaps = 3/255 (1%)
Strand=Plus/Plus
Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762
|||||| || ||||| ||| | || || || || ||||| | ||| ||||||||
Sbjct 143063 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTCATCTAAAATTTGAACTTCCTC 143122
Query 47763 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822
| |||||| ||| |||| | || | | || ||||| || |||| ||| ||| | || ||
Sbjct 143123 TATTTCTGGGTAAAATATCCATTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTGAC 143182
Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882
| ||| | ||| ||| ||||| || | || || | ||| | |||||||||||
Sbjct 143183 TTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTACTCTATAATCTTC 143242
Query 47883 GTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGAGC 47939
||||| |||||| || ||| ||| || | |||| || || | ||| | ||||||
Sbjct 143243 ATCTATGACACCAGCTTCTACATCTATGAAGTGTTTTGTTGCCAAGCTAGAACGAGGAGC 143302
Query 47940 TATTCTACCATAGCA 47954
||| ||||||||
Sbjct 143303 CGCTCTTCCATAGCA 143317
>seq26065
Length=1373002
Score = 98.7 bits (108), Expect = 1e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043
|| ||||| || || || || |||||||| |||||||| ||||| || || | || ||
Sbjct 1017726 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 1017667
Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103
||||| ||||| | ||||| || || || ||||| ||||||||||| || ||||||||
Sbjct 1017666 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 1017607
Query 50104 AC 50105
||
Sbjct 1017606 AC 1017605
Score = 84.2 bits (92), Expect = 3e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516
||| ||||| ||||||| || ||||||| ||||| |||||||| ||||| |||||| |
Sbjct 1007480 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGCTTATACATTTTCCAAATGTCAGG 1007421
Query 50517 ATATTGGATTGGGAAAATAACAAA 50540
|| ||||||||||| || |||||
Sbjct 1007420 GTACTGGATTGGGAAGATGACAAA 1007397
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 717574593204800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |