Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq29163 134 2e-26 seq36501 131 2e-25 seq65209 116 5e-21 seq6493 102 1e-16 seq26065 98.7 1e-15 >seq29163 Length=2664742 Score = 134 bits (148), Expect = 2e-26 Identities = 104/124 (84%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| ||||| ||||| |||||||||||||| || ||||| || || || || | Sbjct 301517 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 301458 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| |||||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 301457 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 301398 Query 50102 CAAC 50105 | || Sbjct 301397 CTAC 301394 Score = 111 bits (122), Expect = 2e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 299832 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 299773 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || || || || |||||||| | ||||||||||||||| |||||| Sbjct 299772 AATTTGGAAGCCATAGAAACAACGAGCCTCGGTAATCTGAACTTCT 299727 >seq36501 Length=2370580 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 2290869 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 2290810 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||||||||| || ||||||||||| || || ||||| || || | | |||| Sbjct 2290809 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 2290750 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 2290749 CTGTTTCTTATACCATA 2290733 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| |||| ||| || ||||| ||||| | || || ||||| || || || || | | Sbjct 2267071 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 2267012 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 |||||||||| || || | ||||| | || || ||| | || || |||| ||| |||| Sbjct 2267011 TGGCATAATCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 2266952 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 2266951 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 2266906 Score = 96.9 bits (106), Expect = 5e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || |||||||| || || | || | ||| | ||||| || || || || ||||| ||| Sbjct 2286198 TAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCATAA 2286139 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 ||||||||||| || |||| |||||| | || || ||| | || ||||| || || Sbjct 2286138 TAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGTAC 2286079 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 2286078 CTCATCAGAATAAAAGCATCTGCCAGACCTTGCACCCCAATTCCAATGGGGCGATGGCGT 2286019 Query 79480 TTATTAGA 79487 ||||| || Sbjct 2286018 TTATTCGA 2286011 >seq65209 Length=3338390 Score = 116 bits (128), Expect = 5e-21 Identities = 179/255 (70%), Gaps = 3/255 (1%) Strand=Plus/Plus Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762 |||||| || ||||| ||| | || || || || ||||| | ||| |||||||| Sbjct 2239494 TCCAGTGGAACCAAAGCCTCCGGAACCCCTTTCAGTGTCATCTAAAATTTGAACTTCCTC 2239553 Query 47763 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822 | |||||| ||| |||| |||| | | || |||| || ||| ||| ||| | || || Sbjct 2239554 TATTTCTGGGTAAAATATCCGTTCACAAATGAGCTATGCAGTTCGATCACCCTTTTTGAC 2239613 Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882 | ||| | ||| ||| ||||| || | || || | ||||| ||||||||||| Sbjct 2239614 TTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCTTC 2239673 Query 47883 GTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGAGC 47939 ||||| |||||| |||||| ||| || | |||| || || ||||| | |||||| Sbjct 2239674 ATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCTGCCAAGCCAGAACGAGGAGC 2239733 Query 47940 TATTCTACCATAGCA 47954 | ||| |||||||| Sbjct 2239734 CACTCTTCCATAGCA 2239748 >seq6493 Length=163338 Score = 102 bits (112), Expect = 1e-16 Identities = 176/255 (69%), Gaps = 3/255 (1%) Strand=Plus/Plus Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762 |||||| || ||||| ||| | || || || || ||||| | ||| |||||||| Sbjct 143063 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTCATCTAAAATTTGAACTTCCTC 143122 Query 47763 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822 | |||||| ||| |||| | || | | || ||||| || |||| ||| ||| | || || Sbjct 143123 TATTTCTGGGTAAAATATCCATTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTGAC 143182 Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882 | ||| | ||| ||| ||||| || | || || | ||| | ||||||||||| Sbjct 143183 TTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTACTCTATAATCTTC 143242 Query 47883 GTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGAGC 47939 ||||| |||||| || ||| ||| || | |||| || || | ||| | |||||| Sbjct 143243 ATCTATGACACCAGCTTCTACATCTATGAAGTGTTTTGTTGCCAAGCTAGAACGAGGAGC 143302 Query 47940 TATTCTACCATAGCA 47954 ||| |||||||| Sbjct 143303 CGCTCTTCCATAGCA 143317 >seq26065 Length=1373002 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || || || |||||||| |||||||| ||||| || || | || || Sbjct 1017726 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 1017667 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| ||||| | ||||| || || || ||||| ||||||||||| || |||||||| Sbjct 1017666 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 1017607 Query 50104 AC 50105 || Sbjct 1017606 AC 1017605 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| ||||| ||||||| || ||||||| ||||| |||||||| ||||| |||||| | Sbjct 1007480 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGCTTATACATTTTCCAAATGTCAGG 1007421 Query 50517 ATATTGGATTGGGAAAATAACAAA 50540 || ||||||||||| || ||||| Sbjct 1007420 GTACTGGATTGGGAAGATGACAAA 1007397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717574593204800