Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq42836 86.0 5e-12 >seq42836 Length=1893264 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| |||| ||||| ||||| ||||| | |||| ||||||||| | ||||| || || Sbjct 1011612 GCCACCACAAAGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 1011553 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| |||||| | || |||| ||| || || ||||| |||| || || || || | || Sbjct 1011552 CAAAGTACGTCCATCTTCCACTTGCTTCCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 1011493 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGAC-TCTGCCAACTGTGTCGCCAGCCTCGA 43060 | ||||| || || |||| | | || ||| | | ||| || | ||||| Sbjct 1011492 AATTCCTTCCTTATCCTGGATCTTGACCATTACATCTTCTAT-TGTTTCCGAGGGCTCGA 1011434 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTA-GAGTTTTCACAAAAATTTGCATTTT 43112 | | | || || || || || || | |||| ||||||||||| ||||| || Sbjct 1011433 CCTTGAGAGTGATGGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCATCTT 1011381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381010221124560