Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq36501 138 2e-27 seq29163 129 8e-25 seq26065 107 3e-18 seq65209 96.9 5e-15 seq6493 87.8 2e-12 >seq36501 Length=2370580 Score = 138 bits (152), Expect = 2e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 2290869 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 2290810 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | || | Sbjct 2290809 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 2290750 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 2290749 CTGTTTCTTATACCAT 2290734 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| |||| ||| || ||||| ||||| | || || ||||| || || || || || | Sbjct 2267071 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 2267012 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 |||||||||| || || | ||||| | || || ||| | || || |||| ||| |||| Sbjct 2267011 TGGCATAATCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 2266952 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 2266951 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 2266906 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440 |||| || || ||||| || | | | ||| || ||||| || || || || ||||||| Sbjct 2286200 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 2286141 Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 ||||||||||||| || |||| |||||| | || || || || || ||||| || | Sbjct 2286140 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 2286081 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 | | | |||||||| || ||||| | ||||| || ||||| || || || | || | Sbjct 2286080 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGCACCCCAATTCCAATGGGGCGATGGC 2286021 Query 71561 TCTTATTAGA 71570 ||||| || Sbjct 2286020 GTTTATTCGA 2286011 >seq29163 Length=2664742 Score = 129 bits (142), Expect = 8e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| ||||| | ||| |||||||||||||| || ||||| || || || || | Sbjct 301517 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 301458 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| |||||||||||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 301457 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 301398 Query 42207 C 42207 | Sbjct 301397 C 301397 Score = 96.9 bits (106), Expect = 5e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| || || || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 299832 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 299773 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || || || || |||||||| | |||||||||| ||| |||||| Sbjct 299772 AATTTGGAAGCCATAGAAACAACGAGCCTCGGTAATCTGAACTTCT 299727 >seq26065 Length=1373002 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| || || | || |||||||| |||||||| ||||| || || | || || Sbjct 1017726 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 1017667 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 ||||| ||||||| ||||| ||||| || ||||| ||||||||||| || |||||||| Sbjct 1017666 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 1017608 >seq65209 Length=3338390 Score = 96.9 bits (106), Expect = 5e-15 Identities = 177/256 (69%), Gaps = 5/256 (2%) Strand=Plus/Plus Query 39798 TCCAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTC 39857 |||||| || ||||| ||| | || || || || ||||| | ||| ||||| || Sbjct 2239494 TCCAGTGGAACCAAAGCCTCCGGAACCCCTTTCAGTGTCATCTAAAATTTGAACTTCCTC 2239553 Query 39858 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 39917 | |||||| ||| |||| |||| | | || |||| || ||| ||| ||| | || || Sbjct 2239554 TATTTCTGGGTAAAATATCCGTTCACAAATGAGCTATGCAGTTCGATCACCCTTTTTGAC 2239613 Query 39918 ATTGAAAGTACATTTT-CCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTT 39976 || ||| | | ||| ||| ||||| || | || || | ||||| |||||||||| Sbjct 2239614 -TTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCTT 2239672 Query 39977 CGTCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGACCAGACCTAGGAG 40033 | ||||| ||||| |||||| ||| || |||| | || ||||| | ||||| Sbjct 2239673 CATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCTGCCAAGCCAGAACGAGGAG 2239732 Query 40034 CTATTCTACCATAGCA 40049 | | ||| |||||||| Sbjct 2239733 CCACTCTTCCATAGCA 2239748 >seq6493 Length=163338 Score = 87.8 bits (96), Expect = 2e-12 Identities = 236/356 (66%), Gaps = 9/356 (3%) Strand=Plus/Plus Query 39798 TCCAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTC 39857 |||||| || ||||| ||| | || || || || ||||| | ||| ||||| || Sbjct 143063 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTCATCTAAAATTTGAACTTCCTC 143122 Query 39858 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 39917 | |||||| ||| |||| | || | | || ||||| || |||| ||| ||| | || || Sbjct 143123 TATTTCTGGGTAAAATATCCATTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTGAC 143182 Query 39918 ATTGAAAGTACATTTT-CCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTT 39976 || ||| | | ||| ||| ||||| || | || || | ||| | |||||||||| Sbjct 143183 -TTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTACTCTATAATCTT 143241 Query 39977 CGTCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGACCAGACCTAGGAG 40033 | ||||| ||||| || ||| ||| || |||| | || | ||| | ||||| Sbjct 143242 CATCTATGACACCAGCTTCTACATCTATGAAGTGTTTTGTTGCCAAGCTAGAACGAGGAG 143301 Query 40034 CTATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAACTGTC 40093 | ||| |||||||| ||| | || || ||| || || || | | | | Sbjct 143302 CCGCTCTTCCATAGCACCCAGAAGGAAGGGCTATCTGAATGTCAGTTTTCACAAGC--AC 143359 Query 40094 TTTCTCC--CGGAGGGATAGTATAATCGTAAGCGCTATACAAATCATATCCAGCGG 40147 ||||||| ||| || | || ||||| || || || |||| ||||| || |||| Sbjct 143360 TTTCTCCATCGGTGGTACTGTGTAATCATAGGCACTGTACAGGTCATAGCCCGCGG 143415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670490543963200