Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq23781 187 4e-42 >seq23781 Length=1882226 Score = 187 bits (206), Expect = 4e-42 Identities = 482/732 (66%), Gaps = 2/732 (0%) Strand=Plus/Plus Query 69896 CCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGCTCTTGTGGATG 69955 |||||| |||| ||||| ||| || || || || | |||||| | ||||| | Sbjct 24843 CCTCTGCTGACAACCAAACGTGTTTTCTGGAAAGGTGTTTTGGAGGAGTTGCTGTGGTTT 24902 Query 69956 ATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGAAAGGGTGTACACATTTGGAGCGGC 70015 || ||||| ||||| || || || ||| ||||| || | |||||| | | Sbjct 24903 ATCAAGGGATCCACCAACGCTAAGGAACTGTCTTCCAAGGGAGTGAAAATTTGGGATGCC 24962 Query 70016 AACAGTAGTCGAAGCGTTTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATCTG 70075 ||| | ||| | | |||||| | |||||| || | ||| || || ||| || Sbjct 24963 AACGGGTCCCGAGACTTCTTGGATGGCTTGGGCTTCTCCAATAGAGCTGAAGGGGATTTG 25022 Query 70076 GGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGAGACA 70135 || || || || || |||||||||||||| | || | | || ||| || || Sbjct 25023 GGCCCGGTTTATGGCTTCCAGTGGAGGCATTTTGGGGCTGAATACAAAGATATGGATTCA 25082 Query 70136 GACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTCAAGACCAAT 70195 || ||||| ||||| || || |||||| |||| | | | || ||||| |||| ||||| Sbjct 25083 GATTATTCAGGTCAAGGAGTAGATCAACTGCAAAAAGTGATCGACACAATCAAAACCAAC 25142 Query 70196 CC-AACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGC 70254 || |||| | || || ||| | |||| | |||||||| |||| | | | ||||| Sbjct 25143 CCTAACA-ACAGAAGAATCATCCTGTGTGCTTGGAATCCAAAAGATCTCCCTCTCATGGC 25201 Query 70255 ACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCATGCTT 70314 || || || || ||| | ||||| ||| | |||| | |||| ||| Sbjct 25202 CCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTGAATGGGGAGCTGTCCTGCCA 25261 Query 70315 AATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTC 70374 |||| || ||| | ||||||||||| ||||| ||||| || ||||| ||||| | Sbjct 25262 GTTGTACCAAAGGTCGGGAGACATGGGCCTGGGTGTGCCCTTCAATATTGCCAGCTACGC 25321 Query 70375 TATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACACAC 70434 || | || ||||||| || ||||| || | |||||| | || ||||||||||| Sbjct 25322 CCTGCTCACCTACATGATCGCACACATCACGGACCTGAAGCCAGGTGACTTCGTACACAC 25381 Query 70435 CATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAACG 70494 | || || || ||| | || | ||||||||||||||| | ||| || || | || Sbjct 25382 TCTGGGAGATGCACACATTTACCTGAATCACATCGAGCCACTGAAGACTCAGCTTCAGCG 25441 Query 70495 GGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGAAAATATTGACAGTTT 70554 || || || ||||| |||||||| | | | | |||||||| | || || || Sbjct 25442 AGAACCAAGGCCTTTCCCCAAGCTCAAAATCCTTTGAAAAGTTGAGACAATCGATGACTT 25501 Query 70555 TAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAAGATTCCCATGGTTCT 70614 ||| ||||| ||| || |||| ||| |||| |||| | ||| |||| | Sbjct 25502 CAAGGCTGAAGACTTTCAGATTGAAGGCTACAATCCTCACCCGACTATTAAAATGGAAAT 25561 Query 70615 GGCTGTTTAGAG 70626 |||||| ||||| Sbjct 25562 GGCTGTCTAGAG 25573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740342966283200