Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq37500 114 2e-20 >seq37500 Length=1000 Score = 114 bits (126), Expect = 2e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 112798 ATGGCAAACGAATGCACTCCCGGTGTCTGGGATACACTAGTTGACTCGACAAAAGAAACT 112857 ||| |||||||| || || || ||||||||||| | | ||||| || || ||||| | Sbjct 274 ATGTCAAACGAACGCCCTACCAGTGTCTGGGATGCGTTGGTTGATACGCCAGAAGAAGCC 333 Query 112858 GAAAACCTACGTATCCGTTCCCAACTCATGCGGGCTCTCA--CCCGTACTATAAAGGGCT 112915 || ||||| ||| ||||||| || | ||||| || ||| | ||| | ||| || Sbjct 334 GAGAACCTGCGTGTCCGTTCTCAGTTGATGCGAGCCATCAGGCGGGTAGTGAAAA--CCT 391 Query 112916 GGGATCTTCCGCAAAAAGACGCTGCTGCTCGCCTACATGTTACGCAACCGAGATTGAATG 112975 ||||| | |||||||||| || || || || ||| | || || || || |||||| Sbjct 392 GGGATGTATCGCAAAAAGAAGCGGCCCAGCGGCTGCATATCACTCAGCCAAGGCTGAATG 451 Query 112976 ATCTTCTCAAAGGCAAGATTGACAAGTTCTCTCTGGACGCCCTGGTAAA 113024 || | ||||| || || ||||| || || |||||||| || |||| || Sbjct 452 ATTTGCTCAAGGGGAAAATTGAAAAATTTTCTCTGGATGCTTTGGTGAA 500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896073906716800