Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_005069.1 Length=46339 Score E Sequences producing significant alignments: (Bits) Value seq52723 280 4e-71 seq51123 138 3e-28 >seq52723 Length=2669 Score = 280 bits (310), Expect = 4e-71 Identities = 698/1038 (67%), Gaps = 25/1038 (2%) Strand=Plus/Plus Query 5143 CAGTATAAAGGCGCTGGCATGACTCGTATGGTGATGTCTATTGCCGCCGGTAAAGGTAAT 5202 |||||| ||||||| | | | ||| | | ||||| ||||| || |||||| || Sbjct 846 CAGTATCAAGGCGCAGCATTTGCCCGTGTAGCCATGTCGATTGCTGCATCAAAAGGTGAT 905 Query 5203 TTGGCTGATGCTGCCAAGTTTGCG-GCTACTGAGCTGGGTGATACTGGCCTTTCAATGGC 5261 | | | ||| || ||||| || | | | | || |||| || | |||||||| Sbjct 906 CTTGAAGGTGCCGCTCGTTTTGCTAGCGA-TACGATCGGCGATAGTGATGTATCAATGGC 964 Query 5262 TATCAGTACAGCAGCAGGTTCAGGCGGTGCTTTGATTCCGCAAAATA-TGCAAAATGAAG 5320 || || | ||||| || || ||||| || | || ||||||| ||| | |||| Sbjct 965 AATTGAAACCTCGGCAGGCTCTGGTGGTGCATTAGTGCCACAAAATACTGCGATG-GAAG 1023 Query 5321 TAATTGAACTTCTCCGTGACCGGACAGTTGTCCGTATATTGGGTGCTCGTTCAATCCCGT 5380 ||||||| | | || | || || | || ||| | || || ||||| | || | Sbjct 1024 TAATTGAGTTATTGCGCAATCGCACTATCGTTCGTCGCCTTGGGGCGCGTTCGGTGCCAT 1083 Query 5381 TACCAAACGGTAACCTTTCAATGCCTCGTTTGAGTGGTGGCGCAACAGCTGGTTATGTTG 5440 | || || || ||| | || | || ||| |||| |||||| | ||| | ||| |||| Sbjct 1084 TGCCTAATGGCAACATGACATTACCACGTATGAGCGGTGGCTCGACATCGACTTACGTTG 1143 Query 5441 GGGAAGGGAAAGATGTTGTTGCTACCGGGGCAACGT-TCGATGATGTAAAATTGAGCGCA 5499 | ||||| | ||||| |||| | | | | | | || |||||||| || ||| Sbjct 1144 GTGAAGGCAGCGATGT-GTTGGCATCAAATCCAGATCTGGACGATGTAAAGCTGTCAGCA 1202 Query 5500 AAAACCATGATTGCGCTGGTTCCAGTATCAAACCAGTTGATTGGTCGGGCTGGTTTTAAC 5559 ||||| ||||| | | || ||| | |||||||| |||||||| | || ||| |||| Sbjct 1203 AAAACGATGATCACCTTAGTGCCAATTTCAAACCAATTGATTGGCCAAGCAGGTCGTAAC 1262 Query 5560 GTTGAA---CAGTTGCTGCTAGGCGATATTCTGTCTGCTATCGCCACTCGTGAAGATAAA 5616 |||||| | | | |||| || | || || | || | || ||| |||||||||||| Sbjct 1263 GTTGAAAGCCTGATTCTGCAAGAC-ATGATC-GCCT-CAATGGCCGTGCGTGAAGATAAA 1319 Query 5617 GCGTTTCTTCGTGATGATGGGACCGGTGATACACCAAAAGGTATGAAAGCCGTTGCAACG 5676 |||||| | ||||||||||| | | ||||||| ||| | ||| |||| Sbjct 1320 GCGTTTTTACGTGATGATGGCTCAGCATCAACACCAACAGGCTTTAAAAAGACTGCAGAA 1379 Query 5677 GCAGC--TAACCGTCTTGTTGCATGGACTGGTACGGCAATCAATCTTACAACCATTGATG 5734 | || ||| | ||| | ||| ||||| ||| ||| | | || || |||| Sbjct 1380 GTTGCATTAA--GAACAGTTCCTTGGTCTGGTGTTGCA-TCATTGG--CCACTATCGATG 1434 Query 5735 AATATTTGGATAGTTTGATTCTTAAGCATATGGACTCAAACAGTAATATGATCCGCTGTG 5794 || | ||||| |||||| | |||| ||||| || ||| | |||||| || Sbjct 1435 CATTCCTTGATAGCTTGATTTTAAAGCTGATGGAATCTAACTCCATGATGATCACACCTG 1494 Query 5795 GTTGGGGCCTTTCTAACCGTACTTATATGACCTTGTTCGGGTTGCGAGATGGTAATGGCA 5854 ||||||| | || |||||||| |||| |||| || |||| |||||||| |||| Sbjct 1495 GTTGGGGTTTGTCGCCACGTACTTACATGAAGCTGTTTGGCCTGCGTGATGGTAACGGCA 1554 Query 5855 ATAAAGTCTATCCAGAAATGTC-TCAGGGTATTCTTAAGGGCTATCCGATCCAGCGTACC 5913 ||||||| || ||||||||| | |||||| | || || |||| || ||||| | ||| Sbjct 1555 ATAAAGTTTACCCAGAAATGGCAACAGGGT-TACTGAAAGGCTTCCCTATCCAACACACC 1613 Query 5914 AGCGCTATCCCAGCCAATCTGGGTGATGATGGTAACGAATCTGAGATTTACTTCTGCGAC 5973 | | | |||||| | || || ||| | ||||||||||||||||||||| || Sbjct 1614 AACACCATCCCATCAAACCTAGGTACAGGCACCAACGAATCTGAGATTTACTTCGCAGAT 1673 Query 5974 TTTAACGATGTTGTTATTGGCGAAGACGGCATGATGAAAGTAGATTTCTCAACC--GAAG 6031 ||||||||||| |||| || ||| ||| | | | | |||| ||| || |||| Sbjct 1674 TTTAACGATGTACTTATCGGTGAAAGCGGTAATTTCTCAATCGATT--TCAGCCGTGAAG 1731 Query 6032 CGACTTACAAAGATGCAGATGGCCAGCTTGTCTCAGCATTTGCCCGTAACCAGTCTCTGA 6091 | || ||||||||||| || || | | |||| || ||| ||| ||||| || | | Sbjct 1732 CAACCTACAAAGATGCCGAAGGTAATTTGATCTCTGCCTTTAGCCGCAACCAATCATTAA 1791 Query 6092 TCCGTGTTGTAACTGAACATGATATCGGTTTCCGTCATCCAGAAGGTCTGGTTCTCGGTA 6151 ||||||| ||||| || || ||||| ||||||||||| |||||||| || | || |||| Sbjct 1792 TCCGTGTGGTAACGGACCACGATATTGGTTTCCGTCACCCAGAAGGCCTAGCACTGGGTA 1851 Query 6152 CCGGCGTTATCTGGTAAT 6169 | | || | ||||||| Sbjct 1852 CTGCAGTAACTTGGTAAT 1869 >seq51123 Length=754 Score = 138 bits (152), Expect = 3e-28 Identities = 413/634 (65%), Gaps = 5/634 (1%) Strand=Plus/Plus Query 2669 CAGCTGCCCTGTGTTCTCTATCGTCGAACAGAGAATGGAGGTAGAGAAATTGCCTTTGAT 2728 ||||| || |||| || ||||| ||| ||| || ||| |||| || || ||| Sbjct 2 CAGCTACCTTGTGAGCTTTATCGACGA---GAGGGTGAAGGAAGAGTAAAAGCAACAGAT 58 Query 2729 CATCCCTTGCATGACCTTATTCGTTACCAGCCAAATCGCAAAGATACGGCTTTTGAGTAT 2788 || || || ||||| |||||| | ||||||| || | ||||| || ||||| || Sbjct 59 CACCCACTGTATGACATTATTCATAACCAGCCGAACCAAAAAGACACCAGCTTTGAATAC 118 Query 2789 CACGAACAAACGCAGGGAGTTCTGGGGCTGGAGGGTAACAGCTACTCATTAATTGATCGT 2848 |||| ||| | ||| |||||| || ||||| | |||| |||||| || | Sbjct 119 TACGAGCAATCAATGGGCTGTCTGGGTTTGCGCGGTAATAACTACGCATTAAAAGAATAT 178 Query 2849 AATGGCCGTGGCGATATAACTGAGCTGATCCCTATTAACCCTCATAAAGTTATTGTGCTG 2908 || || ||| | || | || |||||||| | ||||| |||||||| || | Sbjct 179 GATAGCGATGGATACATCAAAGAACTGATCCCGCTAAACCCAGATAAAGTTCAAGTATTA 238 Query 2909 AAAGGTCCAGACGGAATGCCGTATTACGATATTCCAAGTATTGGCGAAATTTTGCCTATG 2968 ||||| || || || ||||||| ||| || || |||| |||| | ||| | Sbjct 239 AAAGGGCCTGATGGCCTGCCGTACTACTATCTTGTTGATATTAATGAAACGCTTCCTGCG 298 Query 2969 CGGATGGTCCATCACATCAAGTCTTTTTCACTGGATGGCTATATAGGAACATCGCCTATA 3028 | | ||||||||||||| ||| || ||||| || || || ||||||||| Sbjct 299 AGATTAATCCATCACATCAAAGGCTTTAGTCTTGATGGTTACATCGGCGTATCGCCTATT 358 Query 3029 CAGACGAACCCAGACGTGCTTGGCCTTGGGAT-AGCGGTCGAACAACATGCTGCACAGGT 3087 || || || || || || |||| ||| || ||| || |||||||| | | || Sbjct 359 CAAACCAATCCTGATGTATTTGGG-TTGTCATTAGCTACAGAGCAACATGCAGGTAATGT 417 Query 3088 ATTTGCACGAGGCACCACTATGTCGGGTGTTATTGAACGCCCTTTCGAGGCTAAGGCGAT 3147 ||||| |||||||| | || || ||||| || ||| || | ||||| || Sbjct 418 CTTTGCTAATGGCACCACACTCAGCGGCGTGATTGAGCGTCCTCATGACGTCAAGGCAAT 477 Query 3148 AGCTAGCCAAGCGGCGGTTGATGCCATTCTGGCTAAATGGACGGAGCGTTATGGCGGCGT 3207 | |||| | |||| ||||| | || | | |||||| | ||| | Sbjct 478 TGACTCTCAAGAGAAAATTGACGCCATATTAAACAAGTTTAAAGAGCGTCACTCAGGCCT 537 Query 3208 TAGAAATGCCTTCTCGGTAGGGATGTTGCAAGAAGGGATGACCTACAAGCAACTTTCTCA 3267 | ||||| ||||| || | |||| |||||||||| |||| |||||| || | || Sbjct 538 ACGCAATGCTTTCTCAGTTGCGATGCTGCAAGAAGGAATGAGCTACAAACAGTTATCGAT 597 Query 3268 AGATAACGAAAAAGCCCAGCTTCTACAAAGCCGT 3301 ||||||||||||||||| | || |||| ||| Sbjct 598 GGATAACGAAAAAGCCCAATTGCTTGAAAGTCGT 631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148027160253840