Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_005262.3 Length=63882 Score E Sequences producing significant alignments: (Bits) Value seq73604 183 1e-41 seq48801 183 1e-41 seq76879 165 3e-36 seq7145 145 3e-30 seq6427 145 3e-30 seq38074 84.2 9e-12 >seq73604 Length=2001 Score = 183 bits (202), Expect = 1e-41 Identities = 538/812 (66%), Gaps = 24/812 (3%) Strand=Plus/Plus Query 42162 TGGATGGCTTGGGATAAGCC-GGTCTACGCGGCGCCGGGCCCGGTCGCGGCCGATCGTCT 42220 ||| | |||||||| |||| ||| | || ||||| || |||||||| | ||||| || Sbjct 976 TGGCTCGCTTGGGA-AAGCGTGGTGGATGCTGCGCCTGGTCCGGTCGCCGAAGATCGCCT 1034 Query 42221 GTACGTGATGGGCGACGGCGCGCCGAAGATGATCGTCGGCGGCACGACGTACCCGCTCGC 42280 ||| | | ||||| |||| ||||| |||| ||||| |||||| || |||||||| Sbjct 1035 CTACTTTACTGGCGATGGCGTTCCGAAAGTGATGATCGGCACCACGACCTATCCGCTCGC 1094 Query 42281 GGTTCCGATGCCGAGCGCCGCGCTCACTGCGGCGACG-AGC----GGCACGGGCACCGGC 42335 || || || || ||| | || |||| | || || || || || ||||| Sbjct 1095 TGTGCC-ATTCCCAGC-CAATGC--ACTG-GTCGCCGCAGTCTCAGGAACAAGCACCTCG 1149 Query 42336 GACGTGTTCTCGCGCGTCTACGTCTACACGTTCGTGACCGGGTTCGGCGAGGAATCCGAA 42395 ||| | || ||||| ||| || || || | || || ||||| ||||||||| ||| Sbjct 1150 GACATTGTCACGCGCACCTATGTTTATACTTATGTCACATCGTTCGACGAGGAATCGGAA 1209 Query 42396 CCGT---CCGCCATCTCGAACGAGGTGAACTGGCAGGCCGGACAGACCGTCACCCTCTCC 42452 || |||||| | | || | | |||| |||| ||||| | ||||| || Sbjct 1210 CCAAGCCCCGCCAGCGTGCCCGTAG---ATTGGCGCCCCGGGCAGACGATGACCCTTTCG 1266 Query 42453 GGCTTTCAGGCGGCGCCAGCCGGCCGCAACATCACGAAGCAGCGCATCTACCGCTCGCAA 42512 ||||| |||| |||| || ||| || |||| | ||||| ||||| || ||| Sbjct 1267 GGCTTCGCGGCGCCGCCGGCTGGCACCAGGATCAATCGTCGTCGCATTTACCGTTCCCAA 1326 Query 42513 ACGAGCCTGTCGGGCACTGACCTCTACTTCATCGCCGAACGCGACGCATCTGCTGCTAAC 42572 || | | ||||| | |||| ||||||||||| | || | || || ||| Sbjct 1327 TCGGGGAAGAGCGGCACCTTCTTCTATTTCATCGCCGAGCAGCCGGCCACCGCGGCAAAC 1386 Query 42573 TTCGTCGATAATGTGCCTTT-GTCGGATCAAAACGAGCCGCTTCCCTCGCTCGAATGGAA 42631 || |||||| | || | | || || || || ||||| || || || | | || Sbjct 1387 TTTGTCGATGCCATCGCTGTCGACGCATTCCAA-GAACCGCTGCCGTCCATCAATTACAA 1445 Query 42632 CGCGCCGCCGGACGACCTGACCGGCCTTATCTCGCTGCCGAACGGCATGATGGCCGCCTT 42691 ||||| || ||||||| | || || ||| | || || |||||||| ||||||||||| Sbjct 1446 TGCGCCTCCCAACGACCTAAAGGGGCTGATCGCCCTTCCAAACGGCATCATGGCCGCCTT 1505 Query 42692 CCGCGGG--AAAGAGCTCTGGCTCTGCGAGCCGTGGCGCCCGCACGCGTGGCCCCAGAAA 42749 ||| || || || ||| ||| | |||| || ||||| || ||||| |||| Sbjct 1506 -CGCTGGCCGAAAAG-TCTATTTCTCTGTCCCGTATCGACCGCATGCCTGGCCGGAGAAG 1563 Query 42750 TACGTGCTGACGATGGATTACAACATCGTCGCGCTCGGCGCCTACGGCACGACGATCGTG 42809 | |||| |||| | ||||| | | || | || |||||| |||| || | || || Sbjct 1564 TTCGTGATGACCGTTGATTATCCCGTGGTGGGCCTTGGCGCCATCGGCTCGTCCATGGTC 1623 Query 42810 GTCGCGACGGACGGCCAGCCCTACATCGTCTCCGGCGCGTCGCCCGACGCCATGTCTCAG 42869 || ||| ||| ||||||| | || |||||| || |||| || | ||| || Sbjct 1624 GTTATGACTACTGGCACGCCCTACTTAGTATCCGGCTCGACGCCTGATTCTATGCAGCAA 1683 Query 42870 GAAAAGCTCGAGCTCAACCTGCCGTGCATCAACGCGCGCGGGCTCGTCGACCTCGGCTAT 42929 | ||| |||| | || ||||| || || ||||| || || |||| |||||||| Sbjct 1684 GTGAAGATCGAACAAAATCTGCCTTGTATTAACGCACGTGGAATCGTGGACCTCGGAATG 1743 Query 42930 GCGATCGCCTATCCGTCTCACGATGGGCTCGT 42961 ||||| | |||||| || |||| || || || Sbjct 1744 GCGATTGTCTATCCTTCCAACGAGGGACTGGT 1775 >seq48801 Length=253520 Score = 183 bits (202), Expect = 1e-41 Identities = 527/794 (66%), Gaps = 30/794 (4%) Strand=Plus/Plus Query 42183 GTCTACGCGGCGCCGGGCCCGGTCGCGGCCGATCGTCTGTACGTGATGGGCGACGGCGCG 42242 ||| | ||||| || || ||||| || || || |||| | ||||||||||||| Sbjct 138567 GTCGATGCGGCCCCCGGGCCGGTAGCACAGGAGCGCTTGTATTACACGGGCGACGGCGCG 138626 Query 42243 CCGAAGATGATCGTCGGCGGCACGACGTACCCGCTCGCGGTTCCGATGCCGAGCGCC-GC 42301 || || ||| | ||| | | | | |||||||| || ||| |||| || Sbjct 138627 CCAAAAATGCGCATCGAAGATGATATCTTCAATCTCGCGGTGCCCCGGCC---CGCCAGC 138683 Query 42302 GCTC--ACTGCGGCGACGAGCGGCACGGGCACCGGCGACGTGTTCTCG----CGCGTCTA 42355 |||| || ||||| | | |||| |||||||||| || | | | || ||| Sbjct 138684 GCTCTGACAGCGGCCGCCACCGGCGCGGGCACCGGAGA----TACCCAAAGCCGAACCTA 138739 Query 42356 CGTCTACACGTTCGTGACCGGGTTCGGCGAGGAATCCGAACCGTCCGCCATCT-CGAACG 42414 |||||| || | ||| || | ||||||||||| | | |||||| ||| || ||||| Sbjct 138740 CGTCTATACCTACGTTACTGACTTCGGCGAGGAGACGGCACCGTC-GCCTGCTTCGAACA 138798 Query 42415 AGGTGAACTGGCAGGCCGGACAGACCGTCACCCTCTCCGGCTT--TCAGGCGGCGCCAGC 42472 | ||||| || |||| ||| |||||| || || ||||| ||| || || | || Sbjct 138799 TCATTGACTGGAAGCCCGGGCAGTACGTCACGCTTTCGGGCTTCGTCATGCC-CGTC-GC 138856 Query 42473 CGGCCGCAACATCACGAAGCAGCGCATCTACCGCTCGCAAACGAGCCTGTCGGGCACTGA 42532 ||| || | || |||||||||||||| |||||| || || | | || || | Sbjct 138857 CGGACGAAGGATTACGAAGCAGCGCATTTACCGCAGCCAGACCGGTTCCACCGGGACCTA 138916 Query 42533 CCTCTACTTCATCGCCGAACGCGACGCATCTGCTGCTAACTTCGTCGATAATGT-GCCTT 42591 | || ||||||||||||||| |||| | |||| |||||| || || ||| || | Sbjct 138917 TTTGTATTTCATCGCCGAACGCCCCGCAGCGGCTGATAACTTTGTTGACGGTGTCGCGGT 138976 Query 42592 TGTCGGATCAAAACGAGCCGCTTCCCTCGCTCGAATGGAACGCGCCGCCGGACGACCTGA 42651 || || || || ||| ||| |||||| || ||| ||| ||| || | | || | Sbjct 138977 TGACGCATTTCAAGAAGC-GCTCCCCTCGGCCGGCTGGGACGAGCCACCAGCGGCACTCA 139035 Query 42652 CCGGCCTTATCTCGCTGCCGAACGGCATGATGGCCGCCTTCCGCGGGAAAGAGC-TCTGG 42710 ||||||| | | ||||||||||||||||||| || || || ||| ||| ||| Sbjct 139036 CCGGCCTCACTGTGATGCCGAACGGCATGATGGCGGCATT-CGTCGGACGCAGCGTCTAC 139094 Query 42711 CTCTGCGAGCCGTGGCGCCCGCACGCGTGGCCCCAGAAATACGTGCTGACGATGGATTAC 42770 |||||||||| |||||||| |||| ||||| | |||||| | ||| || | Sbjct 139095 TTCTGCGAGCCATGGCGCCCACACGTCTGGCCGGAAAAATACATCTTGAACTGCGACAGC 139154 Query 42771 AACATCGTCGCGCTCGGCGCCTACGGCACGACGATCGTGGTCGCGACGGACGGCCAGCCC 42830 || | || |||||||| | ||| | | | || ||| |||| | | | ||| Sbjct 139155 GACGTGGTTGCGCTCGGATCGATCGGAAGTGTGCTAGTCGTCATGACGAAGGCAAATCCC 139214 Query 42831 TACATCGTCTCCGGCGCGTCGCCCGACGCCAT---GTCTCAGGAAAAGCTCGAGCTCAAC 42887 ||| || | ||||| || || | || ||||| ||||||||||| || Sbjct 139215 TACGTCATGACCGGCAGCCATCCGGATTCGATGCAGTCTC---AAAAGCTCGAGTCGAAT 139271 Query 42888 CTGCCGTGCATCAACGCGCGCGGGCTCGTCGACCTCGGCTATGCGATCGCCTATCCGTCT 42947 | || |||||||||||||| ||| ||| || ||||| | ||| ||| ||||||| Sbjct 139272 TTCCCTTGCATCAACGCGCGAGGGGTCGCTGATCTCGGGTTTGCAATCTGCTATCCGAGC 139331 Query 42948 CACGATGGGCTCGT 42961 ||||||| || || Sbjct 139332 AACGATGGTCTTGT 139345 >seq76879 Length=36809 Score = 165 bits (182), Expect = 3e-36 Identities = 330/481 (69%), Gaps = 20/481 (4%) Strand=Plus/Plus Query 27693 CGACAGCAAGATAATCGGGCCGAGATGGCAGTAGACGAGGACTACTATGACAATATCCAG 27752 ||||| || || ||||| || | ||| || || || |||| ||| |||||||| ||| Sbjct 26233 CGACAACATGACAATCGCATCGCGCAGGCTGTCGAAGAAGACTTCTACGACAATATTCAG 26292 Query 27753 TGGTCGCAGGACGAGATCGACGAGC---TGAAGGAGCGTGGACAGGCGCCGACCGTCTAC 27809 ||| ||| || ||| || | || ||||||| || || |||| |||| |||||| Sbjct 26293 TGG-CGC--GAAGAGGACGCCCAGACGTTGAAGGATCGCGGCCAGGTGCCGCTGGTCTAC 26349 Query 27810 AACGTCATCTCGCAGAGCGTGAACTGGATCATCGGTAGCGAGAAGCGCGGCCGGTCTGAC 27869 |||||||| || | ||| | ||| | | |||| || ||| || | || Sbjct 26350 AACGTCATTTCCGCGTCCGTCGATTGGGTAACAGGTACGGAAAAGAAGACACGCACCGAT 26409 Query 27870 TTCAAGGTGCTGCCGCGTCGCAAGGACGGCGGCAAGGCGGCCGAGCGCAAGACCGCCCTC 27929 | |||| | ||||| || |||||||| | | ||||| |||| |||||||||||| | ||| Sbjct 26410 TACAAGATCCTGCCTCGACGCAAGGAAGACAGCAAGCCGGCGGAGCGCAAGACCTCGCTC 26469 Query 27930 CTCAAGTACCTGTCCGACGTGAACCACACGCCGTTCGAGCGCTCGATGGCGTTTGAGGAG 27989 | ||||| ||||| |||||||||| || || ||| | || ||||| ||||| Sbjct 26470 ATGAAGTATCTGTCGGACGTGAACCGGACACCATTCCATACATCTCGCGCGTTCGAGGAC 26529 Query 27990 ACGACGAAGGCCGGCATTGGCTGGCTGGAATCGCAGGTGCAGGACGAGAACGACGGCGAG 28049 | ||||| ||| ||||||||||| || | || ||| | ||||| ||||| Sbjct 26530 GCAGTGAAGGTCGGGATTGGCTGGCTTGA--GGATGGCGCA----AACCACGACAGCGAG 26583 Query 28050 C---CGATC---TACGCGGGCGCCGAGAGCTGGCGCAACATCCTCTGGGACAGCAC-GTA 28102 | |||| ||| || | ||||||||||| |||||||| ||||||||| | | | Sbjct 26584 CTTGAGATCATTTACTCGAGGTATGAGAGCTGGCGGAACATCCTATGGGACAGCGCAGCA 26643 Query 28103 CCGCCGGCTCGACATGGACGACTGCCGGTACATCTTCCGCGTGAAGTGGGTCGACCTCGA 28162 | | ||||| || ||| | || | |||||||| |||||||| |||||||| Sbjct 26644 AC-CGAACTCGATTTGAGCGATGGACGCTTTATCTTCCGGTCAAAGTGGGTTGACCTCGA 26702 Query 28163 C 28163 | Sbjct 26703 C 26703 >seq7145 Length=2121 Score = 145 bits (160), Expect = 3e-30 Identities = 250/360 (69%), Gaps = 5/360 (1%) Strand=Plus/Plus Query 58592 CCGTGCTGCTGCACGAGGCGTTCCACCAAGGCGGCGAGAAGCTGATCGGCACGCCGGCAT 58651 |||||||||| ||||| ||||||||| |||| ||||| ||||||||||||||||||| Sbjct 450 CCGTGCTGCTCCACGAAGCGTTCCACAGCGGCGCCGAGAGACTGATCGGCACGCCGGCAT 509 Query 58652 GGAATGGGCTGATGGGGCGCCTCGATGCGCTGCACCGTCAGGCTCGGCAGTCGAGCGGCC 58711 ||||| ||| || |||||| | ||||| ||| || || || ||| | || Sbjct 510 GGAATACGCTCCTGAAGCGCCTTGGCGCGCTCCACAAGCAATTTCAGCGGTCCCGTGGAG 569 Query 58712 GGGCGCGCGAGTTCTACGATCAAGCCCGAGCCCGCGTTGCGAGCGCGCA---ACAAGCTG 58768 | || || |||| ||| || || | ||||||||| | || | |||| | | Sbjct 570 GCGCCCGGACATTCTTCGACGCGGCACGCGATCGCGTTGCGCGTGCTGAAGCACAAACCG 629 Query 58769 GCGGCATGCCCGAGGCGCTGACCGCGGAGGAATTCGGCGCCTACACGATCGAGCAGTACG 58828 || ||||| | || | |||||||| || ||||||||||| || |||| || | |||| Sbjct 630 GCCGCATGTCGGAAGAACTGACCGCCGAAGAATTCGGCGCATATGCGATTGAAGAATACG 689 Query 58829 A-GCAGGCACCCTCCGCGTTCCGGCGCTGGGTCGACGACGTGATCGGCGCCGTGAAGGCA 58887 | ||| || || |||| ||||||||| || ||| | ||||| || ||||| Sbjct 690 ACGCA-GCGCCGGGCGCGGCGAAGCGCTGGGTTGATGACCTCGTCGGCCATGTAAAGGCG 748 Query 58888 TGGCTGCTGCGGCGCTTCGGCACGCAGATCGGCGACGTCACGCCGGCGCAGCTCCGCGCG 58947 ||| |||| || | |||||| ||||| || || ||||| || ||| | ||| || Sbjct 749 TGGGTGCTTCGAAGGTTCGGCCGACAGATTGGATCTGTGACGCCTGCACAGTTGCGCTCG 808 >seq6427 Length=47605 Score = 145 bits (160), Expect = 3e-30 Identities = 250/360 (69%), Gaps = 5/360 (1%) Strand=Plus/Plus Query 58592 CCGTGCTGCTGCACGAGGCGTTCCACCAAGGCGGCGAGAAGCTGATCGGCACGCCGGCAT 58651 |||||||||| ||||| ||||||||| |||| ||||| ||||||||||||||||||| Sbjct 9936 CCGTGCTGCTCCACGAAGCGTTCCACAGCGGCGCCGAGAGACTGATCGGCACGCCGGCAT 9995 Query 58652 GGAATGGGCTGATGGGGCGCCTCGATGCGCTGCACCGTCAGGCTCGGCAGTCGAGCGGCC 58711 ||||| ||| || |||||| | ||||| ||| || || || ||| | || Sbjct 9996 GGAATACGCTCCTGAAGCGCCTTGGCGCGCTCCACAAGCAATTTCAGCGGTCCCGTGGAG 10055 Query 58712 GGGCGCGCGAGTTCTACGATCAAGCCCGAGCCCGCGTTGCGAGCGCGCA---ACAAGCTG 58768 | || || |||| ||| || || | ||||||||| | || | |||| | | Sbjct 10056 GCGCCCGGACATTCTTCGACGCGGCACGCGATCGCGTTGCGCGTGCTGAAGCACAAACCG 10115 Query 58769 GCGGCATGCCCGAGGCGCTGACCGCGGAGGAATTCGGCGCCTACACGATCGAGCAGTACG 58828 || ||||| | || | |||||||| || ||||||||||| || |||| || | |||| Sbjct 10116 GCCGCATGTCGGAAGAACTGACCGCCGAAGAATTCGGCGCATATGCGATTGAAGAATACG 10175 Query 58829 A-GCAGGCACCCTCCGCGTTCCGGCGCTGGGTCGACGACGTGATCGGCGCCGTGAAGGCA 58887 | ||| || || |||| ||||||||| || ||| | ||||| || ||||| Sbjct 10176 ACGCA-GCGCCGGGCGCGGCGAAGCGCTGGGTTGATGACCTCGTCGGCCATGTAAAGGCG 10234 Query 58888 TGGCTGCTGCGGCGCTTCGGCACGCAGATCGGCGACGTCACGCCGGCGCAGCTCCGCGCG 58947 ||| |||| || | |||||| ||||| || || ||||| || ||| | ||| || Sbjct 10235 TGGGTGCTTCGAAGGTTCGGCCGACAGATTGGATCTGTGACGCCTGCACAGTTGCGCTCG 10294 >seq38074 Length=177082 Score = 84.2 bits (92), Expect = 9e-12 Identities = 103/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 14420 GCGGTGCGTCGCCTCATGCCTGTCGAGTGTGAGCGATTGCAGGAGTTCCCGGACGGCTAC 14479 || || || ||||||| ||| | || || ||||||||||||| ||||| ||||| ||| Sbjct 144316 GCAGTCCGCCGCCTCACGCCCATGGAATGCGAGCGATTGCAGGGATTCCCCGACGGATAC 144257 Query 14480 ACCGATGTCCCGTATCACGGCGAGCC---TGCTGCTGACGGTCCGCGCTACAAGGCGATC 14536 ||||| |||| | | |||| |||| | | ||||| || ||||||||||| | Sbjct 144256 ACCGACATCCCATGGCGCGGCAAGCCAAACAGTCCAGACGGCCCACGCTACAAGGCACTT 144197 Query 14537 GGCAACAGCATGGCAGTGCC 14556 || |||||| ||| ||||| Sbjct 144196 GGTAACAGCTGGGCTGTGCC 144177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 204105082710360