Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_005262.3
Length=63882
Score E
Sequences producing significant alignments: (Bits) Value
seq73604 183 1e-41
seq48801 183 1e-41
seq76879 165 3e-36
seq7145 145 3e-30
seq6427 145 3e-30
seq38074 84.2 9e-12
>seq73604
Length=2001
Score = 183 bits (202), Expect = 1e-41
Identities = 538/812 (66%), Gaps = 24/812 (3%)
Strand=Plus/Plus
Query 42162 TGGATGGCTTGGGATAAGCC-GGTCTACGCGGCGCCGGGCCCGGTCGCGGCCGATCGTCT 42220
||| | |||||||| |||| ||| | || ||||| || |||||||| | ||||| ||
Sbjct 976 TGGCTCGCTTGGGA-AAGCGTGGTGGATGCTGCGCCTGGTCCGGTCGCCGAAGATCGCCT 1034
Query 42221 GTACGTGATGGGCGACGGCGCGCCGAAGATGATCGTCGGCGGCACGACGTACCCGCTCGC 42280
||| | | ||||| |||| ||||| |||| ||||| |||||| || ||||||||
Sbjct 1035 CTACTTTACTGGCGATGGCGTTCCGAAAGTGATGATCGGCACCACGACCTATCCGCTCGC 1094
Query 42281 GGTTCCGATGCCGAGCGCCGCGCTCACTGCGGCGACG-AGC----GGCACGGGCACCGGC 42335
|| || || || ||| | || |||| | || || || || || |||||
Sbjct 1095 TGTGCC-ATTCCCAGC-CAATGC--ACTG-GTCGCCGCAGTCTCAGGAACAAGCACCTCG 1149
Query 42336 GACGTGTTCTCGCGCGTCTACGTCTACACGTTCGTGACCGGGTTCGGCGAGGAATCCGAA 42395
||| | || ||||| ||| || || || | || || ||||| ||||||||| |||
Sbjct 1150 GACATTGTCACGCGCACCTATGTTTATACTTATGTCACATCGTTCGACGAGGAATCGGAA 1209
Query 42396 CCGT---CCGCCATCTCGAACGAGGTGAACTGGCAGGCCGGACAGACCGTCACCCTCTCC 42452
|| |||||| | | || | | |||| |||| ||||| | ||||| ||
Sbjct 1210 CCAAGCCCCGCCAGCGTGCCCGTAG---ATTGGCGCCCCGGGCAGACGATGACCCTTTCG 1266
Query 42453 GGCTTTCAGGCGGCGCCAGCCGGCCGCAACATCACGAAGCAGCGCATCTACCGCTCGCAA 42512
||||| |||| |||| || ||| || |||| | ||||| ||||| || |||
Sbjct 1267 GGCTTCGCGGCGCCGCCGGCTGGCACCAGGATCAATCGTCGTCGCATTTACCGTTCCCAA 1326
Query 42513 ACGAGCCTGTCGGGCACTGACCTCTACTTCATCGCCGAACGCGACGCATCTGCTGCTAAC 42572
|| | | ||||| | |||| ||||||||||| | || | || || |||
Sbjct 1327 TCGGGGAAGAGCGGCACCTTCTTCTATTTCATCGCCGAGCAGCCGGCCACCGCGGCAAAC 1386
Query 42573 TTCGTCGATAATGTGCCTTT-GTCGGATCAAAACGAGCCGCTTCCCTCGCTCGAATGGAA 42631
|| |||||| | || | | || || || || ||||| || || || | | ||
Sbjct 1387 TTTGTCGATGCCATCGCTGTCGACGCATTCCAA-GAACCGCTGCCGTCCATCAATTACAA 1445
Query 42632 CGCGCCGCCGGACGACCTGACCGGCCTTATCTCGCTGCCGAACGGCATGATGGCCGCCTT 42691
||||| || ||||||| | || || ||| | || || |||||||| |||||||||||
Sbjct 1446 TGCGCCTCCCAACGACCTAAAGGGGCTGATCGCCCTTCCAAACGGCATCATGGCCGCCTT 1505
Query 42692 CCGCGGG--AAAGAGCTCTGGCTCTGCGAGCCGTGGCGCCCGCACGCGTGGCCCCAGAAA 42749
||| || || || ||| ||| | |||| || ||||| || ||||| ||||
Sbjct 1506 -CGCTGGCCGAAAAG-TCTATTTCTCTGTCCCGTATCGACCGCATGCCTGGCCGGAGAAG 1563
Query 42750 TACGTGCTGACGATGGATTACAACATCGTCGCGCTCGGCGCCTACGGCACGACGATCGTG 42809
| |||| |||| | ||||| | | || | || |||||| |||| || | || ||
Sbjct 1564 TTCGTGATGACCGTTGATTATCCCGTGGTGGGCCTTGGCGCCATCGGCTCGTCCATGGTC 1623
Query 42810 GTCGCGACGGACGGCCAGCCCTACATCGTCTCCGGCGCGTCGCCCGACGCCATGTCTCAG 42869
|| ||| ||| ||||||| | || |||||| || |||| || | ||| ||
Sbjct 1624 GTTATGACTACTGGCACGCCCTACTTAGTATCCGGCTCGACGCCTGATTCTATGCAGCAA 1683
Query 42870 GAAAAGCTCGAGCTCAACCTGCCGTGCATCAACGCGCGCGGGCTCGTCGACCTCGGCTAT 42929
| ||| |||| | || ||||| || || ||||| || || |||| ||||||||
Sbjct 1684 GTGAAGATCGAACAAAATCTGCCTTGTATTAACGCACGTGGAATCGTGGACCTCGGAATG 1743
Query 42930 GCGATCGCCTATCCGTCTCACGATGGGCTCGT 42961
||||| | |||||| || |||| || || ||
Sbjct 1744 GCGATTGTCTATCCTTCCAACGAGGGACTGGT 1775
>seq48801
Length=253520
Score = 183 bits (202), Expect = 1e-41
Identities = 527/794 (66%), Gaps = 30/794 (4%)
Strand=Plus/Plus
Query 42183 GTCTACGCGGCGCCGGGCCCGGTCGCGGCCGATCGTCTGTACGTGATGGGCGACGGCGCG 42242
||| | ||||| || || ||||| || || || |||| | |||||||||||||
Sbjct 138567 GTCGATGCGGCCCCCGGGCCGGTAGCACAGGAGCGCTTGTATTACACGGGCGACGGCGCG 138626
Query 42243 CCGAAGATGATCGTCGGCGGCACGACGTACCCGCTCGCGGTTCCGATGCCGAGCGCC-GC 42301
|| || ||| | ||| | | | | |||||||| || ||| |||| ||
Sbjct 138627 CCAAAAATGCGCATCGAAGATGATATCTTCAATCTCGCGGTGCCCCGGCC---CGCCAGC 138683
Query 42302 GCTC--ACTGCGGCGACGAGCGGCACGGGCACCGGCGACGTGTTCTCG----CGCGTCTA 42355
|||| || ||||| | | |||| |||||||||| || | | | || |||
Sbjct 138684 GCTCTGACAGCGGCCGCCACCGGCGCGGGCACCGGAGA----TACCCAAAGCCGAACCTA 138739
Query 42356 CGTCTACACGTTCGTGACCGGGTTCGGCGAGGAATCCGAACCGTCCGCCATCT-CGAACG 42414
|||||| || | ||| || | ||||||||||| | | |||||| ||| || |||||
Sbjct 138740 CGTCTATACCTACGTTACTGACTTCGGCGAGGAGACGGCACCGTC-GCCTGCTTCGAACA 138798
Query 42415 AGGTGAACTGGCAGGCCGGACAGACCGTCACCCTCTCCGGCTT--TCAGGCGGCGCCAGC 42472
| ||||| || |||| ||| |||||| || || ||||| ||| || || | ||
Sbjct 138799 TCATTGACTGGAAGCCCGGGCAGTACGTCACGCTTTCGGGCTTCGTCATGCC-CGTC-GC 138856
Query 42473 CGGCCGCAACATCACGAAGCAGCGCATCTACCGCTCGCAAACGAGCCTGTCGGGCACTGA 42532
||| || | || |||||||||||||| |||||| || || | | || || |
Sbjct 138857 CGGACGAAGGATTACGAAGCAGCGCATTTACCGCAGCCAGACCGGTTCCACCGGGACCTA 138916
Query 42533 CCTCTACTTCATCGCCGAACGCGACGCATCTGCTGCTAACTTCGTCGATAATGT-GCCTT 42591
| || ||||||||||||||| |||| | |||| |||||| || || ||| || |
Sbjct 138917 TTTGTATTTCATCGCCGAACGCCCCGCAGCGGCTGATAACTTTGTTGACGGTGTCGCGGT 138976
Query 42592 TGTCGGATCAAAACGAGCCGCTTCCCTCGCTCGAATGGAACGCGCCGCCGGACGACCTGA 42651
|| || || || ||| ||| |||||| || ||| ||| ||| || | | || |
Sbjct 138977 TGACGCATTTCAAGAAGC-GCTCCCCTCGGCCGGCTGGGACGAGCCACCAGCGGCACTCA 139035
Query 42652 CCGGCCTTATCTCGCTGCCGAACGGCATGATGGCCGCCTTCCGCGGGAAAGAGC-TCTGG 42710
||||||| | | ||||||||||||||||||| || || || ||| ||| |||
Sbjct 139036 CCGGCCTCACTGTGATGCCGAACGGCATGATGGCGGCATT-CGTCGGACGCAGCGTCTAC 139094
Query 42711 CTCTGCGAGCCGTGGCGCCCGCACGCGTGGCCCCAGAAATACGTGCTGACGATGGATTAC 42770
|||||||||| |||||||| |||| ||||| | |||||| | ||| || |
Sbjct 139095 TTCTGCGAGCCATGGCGCCCACACGTCTGGCCGGAAAAATACATCTTGAACTGCGACAGC 139154
Query 42771 AACATCGTCGCGCTCGGCGCCTACGGCACGACGATCGTGGTCGCGACGGACGGCCAGCCC 42830
|| | || |||||||| | ||| | | | || ||| |||| | | | |||
Sbjct 139155 GACGTGGTTGCGCTCGGATCGATCGGAAGTGTGCTAGTCGTCATGACGAAGGCAAATCCC 139214
Query 42831 TACATCGTCTCCGGCGCGTCGCCCGACGCCAT---GTCTCAGGAAAAGCTCGAGCTCAAC 42887
||| || | ||||| || || | || ||||| ||||||||||| ||
Sbjct 139215 TACGTCATGACCGGCAGCCATCCGGATTCGATGCAGTCTC---AAAAGCTCGAGTCGAAT 139271
Query 42888 CTGCCGTGCATCAACGCGCGCGGGCTCGTCGACCTCGGCTATGCGATCGCCTATCCGTCT 42947
| || |||||||||||||| ||| ||| || ||||| | ||| ||| |||||||
Sbjct 139272 TTCCCTTGCATCAACGCGCGAGGGGTCGCTGATCTCGGGTTTGCAATCTGCTATCCGAGC 139331
Query 42948 CACGATGGGCTCGT 42961
||||||| || ||
Sbjct 139332 AACGATGGTCTTGT 139345
>seq76879
Length=36809
Score = 165 bits (182), Expect = 3e-36
Identities = 330/481 (69%), Gaps = 20/481 (4%)
Strand=Plus/Plus
Query 27693 CGACAGCAAGATAATCGGGCCGAGATGGCAGTAGACGAGGACTACTATGACAATATCCAG 27752
||||| || || ||||| || | ||| || || || |||| ||| |||||||| |||
Sbjct 26233 CGACAACATGACAATCGCATCGCGCAGGCTGTCGAAGAAGACTTCTACGACAATATTCAG 26292
Query 27753 TGGTCGCAGGACGAGATCGACGAGC---TGAAGGAGCGTGGACAGGCGCCGACCGTCTAC 27809
||| ||| || ||| || | || ||||||| || || |||| |||| ||||||
Sbjct 26293 TGG-CGC--GAAGAGGACGCCCAGACGTTGAAGGATCGCGGCCAGGTGCCGCTGGTCTAC 26349
Query 27810 AACGTCATCTCGCAGAGCGTGAACTGGATCATCGGTAGCGAGAAGCGCGGCCGGTCTGAC 27869
|||||||| || | ||| | ||| | | |||| || ||| || | ||
Sbjct 26350 AACGTCATTTCCGCGTCCGTCGATTGGGTAACAGGTACGGAAAAGAAGACACGCACCGAT 26409
Query 27870 TTCAAGGTGCTGCCGCGTCGCAAGGACGGCGGCAAGGCGGCCGAGCGCAAGACCGCCCTC 27929
| |||| | ||||| || |||||||| | | ||||| |||| |||||||||||| | |||
Sbjct 26410 TACAAGATCCTGCCTCGACGCAAGGAAGACAGCAAGCCGGCGGAGCGCAAGACCTCGCTC 26469
Query 27930 CTCAAGTACCTGTCCGACGTGAACCACACGCCGTTCGAGCGCTCGATGGCGTTTGAGGAG 27989
| ||||| ||||| |||||||||| || || ||| | || ||||| |||||
Sbjct 26470 ATGAAGTATCTGTCGGACGTGAACCGGACACCATTCCATACATCTCGCGCGTTCGAGGAC 26529
Query 27990 ACGACGAAGGCCGGCATTGGCTGGCTGGAATCGCAGGTGCAGGACGAGAACGACGGCGAG 28049
| ||||| ||| ||||||||||| || | || ||| | ||||| |||||
Sbjct 26530 GCAGTGAAGGTCGGGATTGGCTGGCTTGA--GGATGGCGCA----AACCACGACAGCGAG 26583
Query 28050 C---CGATC---TACGCGGGCGCCGAGAGCTGGCGCAACATCCTCTGGGACAGCAC-GTA 28102
| |||| ||| || | ||||||||||| |||||||| ||||||||| | | |
Sbjct 26584 CTTGAGATCATTTACTCGAGGTATGAGAGCTGGCGGAACATCCTATGGGACAGCGCAGCA 26643
Query 28103 CCGCCGGCTCGACATGGACGACTGCCGGTACATCTTCCGCGTGAAGTGGGTCGACCTCGA 28162
| | ||||| || ||| | || | |||||||| |||||||| ||||||||
Sbjct 26644 AC-CGAACTCGATTTGAGCGATGGACGCTTTATCTTCCGGTCAAAGTGGGTTGACCTCGA 26702
Query 28163 C 28163
|
Sbjct 26703 C 26703
>seq7145
Length=2121
Score = 145 bits (160), Expect = 3e-30
Identities = 250/360 (69%), Gaps = 5/360 (1%)
Strand=Plus/Plus
Query 58592 CCGTGCTGCTGCACGAGGCGTTCCACCAAGGCGGCGAGAAGCTGATCGGCACGCCGGCAT 58651
|||||||||| ||||| ||||||||| |||| ||||| |||||||||||||||||||
Sbjct 450 CCGTGCTGCTCCACGAAGCGTTCCACAGCGGCGCCGAGAGACTGATCGGCACGCCGGCAT 509
Query 58652 GGAATGGGCTGATGGGGCGCCTCGATGCGCTGCACCGTCAGGCTCGGCAGTCGAGCGGCC 58711
||||| ||| || |||||| | ||||| ||| || || || ||| | ||
Sbjct 510 GGAATACGCTCCTGAAGCGCCTTGGCGCGCTCCACAAGCAATTTCAGCGGTCCCGTGGAG 569
Query 58712 GGGCGCGCGAGTTCTACGATCAAGCCCGAGCCCGCGTTGCGAGCGCGCA---ACAAGCTG 58768
| || || |||| ||| || || | ||||||||| | || | |||| | |
Sbjct 570 GCGCCCGGACATTCTTCGACGCGGCACGCGATCGCGTTGCGCGTGCTGAAGCACAAACCG 629
Query 58769 GCGGCATGCCCGAGGCGCTGACCGCGGAGGAATTCGGCGCCTACACGATCGAGCAGTACG 58828
|| ||||| | || | |||||||| || ||||||||||| || |||| || | ||||
Sbjct 630 GCCGCATGTCGGAAGAACTGACCGCCGAAGAATTCGGCGCATATGCGATTGAAGAATACG 689
Query 58829 A-GCAGGCACCCTCCGCGTTCCGGCGCTGGGTCGACGACGTGATCGGCGCCGTGAAGGCA 58887
| ||| || || |||| ||||||||| || ||| | ||||| || |||||
Sbjct 690 ACGCA-GCGCCGGGCGCGGCGAAGCGCTGGGTTGATGACCTCGTCGGCCATGTAAAGGCG 748
Query 58888 TGGCTGCTGCGGCGCTTCGGCACGCAGATCGGCGACGTCACGCCGGCGCAGCTCCGCGCG 58947
||| |||| || | |||||| ||||| || || ||||| || ||| | ||| ||
Sbjct 749 TGGGTGCTTCGAAGGTTCGGCCGACAGATTGGATCTGTGACGCCTGCACAGTTGCGCTCG 808
>seq6427
Length=47605
Score = 145 bits (160), Expect = 3e-30
Identities = 250/360 (69%), Gaps = 5/360 (1%)
Strand=Plus/Plus
Query 58592 CCGTGCTGCTGCACGAGGCGTTCCACCAAGGCGGCGAGAAGCTGATCGGCACGCCGGCAT 58651
|||||||||| ||||| ||||||||| |||| ||||| |||||||||||||||||||
Sbjct 9936 CCGTGCTGCTCCACGAAGCGTTCCACAGCGGCGCCGAGAGACTGATCGGCACGCCGGCAT 9995
Query 58652 GGAATGGGCTGATGGGGCGCCTCGATGCGCTGCACCGTCAGGCTCGGCAGTCGAGCGGCC 58711
||||| ||| || |||||| | ||||| ||| || || || ||| | ||
Sbjct 9996 GGAATACGCTCCTGAAGCGCCTTGGCGCGCTCCACAAGCAATTTCAGCGGTCCCGTGGAG 10055
Query 58712 GGGCGCGCGAGTTCTACGATCAAGCCCGAGCCCGCGTTGCGAGCGCGCA---ACAAGCTG 58768
| || || |||| ||| || || | ||||||||| | || | |||| | |
Sbjct 10056 GCGCCCGGACATTCTTCGACGCGGCACGCGATCGCGTTGCGCGTGCTGAAGCACAAACCG 10115
Query 58769 GCGGCATGCCCGAGGCGCTGACCGCGGAGGAATTCGGCGCCTACACGATCGAGCAGTACG 58828
|| ||||| | || | |||||||| || ||||||||||| || |||| || | ||||
Sbjct 10116 GCCGCATGTCGGAAGAACTGACCGCCGAAGAATTCGGCGCATATGCGATTGAAGAATACG 10175
Query 58829 A-GCAGGCACCCTCCGCGTTCCGGCGCTGGGTCGACGACGTGATCGGCGCCGTGAAGGCA 58887
| ||| || || |||| ||||||||| || ||| | ||||| || |||||
Sbjct 10176 ACGCA-GCGCCGGGCGCGGCGAAGCGCTGGGTTGATGACCTCGTCGGCCATGTAAAGGCG 10234
Query 58888 TGGCTGCTGCGGCGCTTCGGCACGCAGATCGGCGACGTCACGCCGGCGCAGCTCCGCGCG 58947
||| |||| || | |||||| ||||| || || ||||| || ||| | ||| ||
Sbjct 10235 TGGGTGCTTCGAAGGTTCGGCCGACAGATTGGATCTGTGACGCCTGCACAGTTGCGCTCG 10294
>seq38074
Length=177082
Score = 84.2 bits (92), Expect = 9e-12
Identities = 103/140 (74%), Gaps = 3/140 (2%)
Strand=Plus/Minus
Query 14420 GCGGTGCGTCGCCTCATGCCTGTCGAGTGTGAGCGATTGCAGGAGTTCCCGGACGGCTAC 14479
|| || || ||||||| ||| | || || ||||||||||||| ||||| ||||| |||
Sbjct 144316 GCAGTCCGCCGCCTCACGCCCATGGAATGCGAGCGATTGCAGGGATTCCCCGACGGATAC 144257
Query 14480 ACCGATGTCCCGTATCACGGCGAGCC---TGCTGCTGACGGTCCGCGCTACAAGGCGATC 14536
||||| |||| | | |||| |||| | | ||||| || ||||||||||| |
Sbjct 144256 ACCGACATCCCATGGCGCGGCAAGCCAAACAGTCCAGACGGCCCACGCTACAAGGCACTT 144197
Query 14537 GGCAACAGCATGGCAGTGCC 14556
|| |||||| ||| |||||
Sbjct 144196 GGTAACAGCTGGGCTGTGCC 144177
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 204105082710360
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