Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_005284.1 Length=54865 Score E Sequences producing significant alignments: (Bits) Value seq6427 179 1e-40 seq17619 91.5 5e-14 seq61964 80.6 9e-11 >seq6427 Length=47605 Score = 179 bits (198), Expect = 1e-40 Identities = 250/350 (71%), Gaps = 3/350 (1%) Strand=Plus/Plus Query 31272 CGCTTCGTCAGCAACAACCAGTCGAGGTTTGGCGTGTCGGCGATCAGGCGGAACAGGTCC 31331 || ||||||| | || ||||||||| | |||||||| ||||| ||| || Sbjct 19778 CGTTTCGTCAAAAGCAGCCAGTCGAGATCCGGCGTGTCCCTGATCAATTCCCACAATTCT 19837 Query 31332 GCGCGCCACGCCGGATCGACAGTGTTGTCGAAAACGTCGGCGAGCGACGCGCAGAACACG 31391 || ||||| |||||| || | |||||||| || || || | || | ||||| ||| Sbjct 19838 GCTCGCCAGAGCGGATCAACGGCATTGTCGAACACATCCGCCAATGAGGAACAGAAAACG 19897 Query 31392 CGCTGTCGGTGGCCGTGGATTGCATAGAACGCGC---CGTCGCGGTTCCACTTCATGGGC 31448 ||||| ||| |||||| | | | ||||||| | ||||| | ||| | || Sbjct 19898 CGCTGGCGGCGGCCGTTGGCCGAAAAGAACGCCTTCGCTTCGCGCTGCCATCTGCGCGGT 19957 Query 31449 TTGCGCCAGTTCGCGGGCGACGTGCGCCGCTGCGGCGCGCCGGGCCCCCAATTGACCGCC 31508 ||| |||||| ||| |||| || ||| |||||||||| || |||||||| ||| Sbjct 19958 TTGAACCAGTTGGCGAGCGATGTCTTGCGCCGCGGCGCGCCTGGTCCCCAATTCGTCGCA 20017 Query 31509 GTGCCGCCGGAAAAGCGCGCATTGCGCGCCTCGGCATAACAGTGGTCGCATCCCGGACCG 31568 | ||||| |||||| |||||||||||||| ||||| |||||||| || || Sbjct 20018 ATACCGCCACCGAAGCGCTGGTTGCGCGCCTCGGCGTAACAATGGTCGCAGCCAGGCGAA 20077 Query 31569 ACCTTCTGGCAACCTTCCCACGGGTTGAACGTGTGGTCGCACCATTCGAT 31618 ||||||||||| || |||||||| || ||||||||||||||||| || || Sbjct 20078 ACCTTCTGGCATCCCTCCCACGGATTAAACGTGTGGTCGCACCACTCAAT 20127 >seq17619 Length=248000 Score = 91.5 bits (100), Expect = 5e-14 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 4769 CATCGAGTACACCGTCGAAACCGGCTTCACGAACAACGCAGCGGCAGTAGCCGAAGGCGC 4828 |||||||| |||| || || |||||||| || ||||| ||| | || || ||||| || Sbjct 34752 CATCGAGTGGCCCGTAGAGACTGGCTTCACCAATAACGCGGCGCCCGTCGCAGAAGGTGC 34811 Query 4829 ACAGAAACCGACTTCGGATCTGAAGTTCAATCTGAAGAACCAGCCGGTTCGCACGATCGC 4888 ||||||| ||||||||||| |||| | ||||| ||| || |||||||| Sbjct 34812 TGCGAAACCGTATTCGGATCTGACGTTCGACCTGAAATCTGCGCCTGTCGTGACGATCGC 34871 Query 4889 ACATCTGTTCAAGGCGTCGCGTCAGATTCTCGACGATGCGCCGGCACT 4936 || || ||||||| ||| || ||||| | || || || || || || Sbjct 34872 GCACCTCTTCAAGGTGTCTCGACAGATCATGGATGACGCACCCGCGCT 34919 >seq61964 Length=3806 Score = 80.6 bits (88), Expect = 9e-11 Identities = 106/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 41998 TGATTGTCGTCGCGCGTCTACTTCAGGGATTTTCGGCTGGAGGGGAAATGGGAGGTGCGA 42057 |||| || | ||||| |||| ||||| ||||| || || || || ||||| |||| | Sbjct 92 TGATCGTGTTGGCGCGATTACTACAGGGCTTTTCTGCCGGTGGCGAGATGGGGAGTGCCA 151 Query 42058 CAGCGTATCTTCG-CGAGCGCGTGCCGGCCGAGCGGCATGG-ATACTACACGAGCTGGAT 42115 | || | |||| ||||| | || |||| || ||| || ||||||| | |||||||| Sbjct 152 CTGCCT-TCTTGATCGAGCATGCACCCGCCG-GCCGCAAGGCATACTACTCCAGCTGGAT 209 Query 42116 TCAGGCGAGTATCGGGTTCGCG 42137 ||||||||| ||||| ||||| Sbjct 210 TCAGGCGAGCATCGGTGTCGCG 231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175285309501680