Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_005284.1
Length=54865
Score E
Sequences producing significant alignments: (Bits) Value
seq6427 179 1e-40
seq17619 91.5 5e-14
seq61964 80.6 9e-11
>seq6427
Length=47605
Score = 179 bits (198), Expect = 1e-40
Identities = 250/350 (71%), Gaps = 3/350 (1%)
Strand=Plus/Plus
Query 31272 CGCTTCGTCAGCAACAACCAGTCGAGGTTTGGCGTGTCGGCGATCAGGCGGAACAGGTCC 31331
|| ||||||| | || ||||||||| | |||||||| ||||| ||| ||
Sbjct 19778 CGTTTCGTCAAAAGCAGCCAGTCGAGATCCGGCGTGTCCCTGATCAATTCCCACAATTCT 19837
Query 31332 GCGCGCCACGCCGGATCGACAGTGTTGTCGAAAACGTCGGCGAGCGACGCGCAGAACACG 31391
|| ||||| |||||| || | |||||||| || || || | || | ||||| |||
Sbjct 19838 GCTCGCCAGAGCGGATCAACGGCATTGTCGAACACATCCGCCAATGAGGAACAGAAAACG 19897
Query 31392 CGCTGTCGGTGGCCGTGGATTGCATAGAACGCGC---CGTCGCGGTTCCACTTCATGGGC 31448
||||| ||| |||||| | | | ||||||| | ||||| | ||| | ||
Sbjct 19898 CGCTGGCGGCGGCCGTTGGCCGAAAAGAACGCCTTCGCTTCGCGCTGCCATCTGCGCGGT 19957
Query 31449 TTGCGCCAGTTCGCGGGCGACGTGCGCCGCTGCGGCGCGCCGGGCCCCCAATTGACCGCC 31508
||| |||||| ||| |||| || ||| |||||||||| || |||||||| |||
Sbjct 19958 TTGAACCAGTTGGCGAGCGATGTCTTGCGCCGCGGCGCGCCTGGTCCCCAATTCGTCGCA 20017
Query 31509 GTGCCGCCGGAAAAGCGCGCATTGCGCGCCTCGGCATAACAGTGGTCGCATCCCGGACCG 31568
| ||||| |||||| |||||||||||||| ||||| |||||||| || ||
Sbjct 20018 ATACCGCCACCGAAGCGCTGGTTGCGCGCCTCGGCGTAACAATGGTCGCAGCCAGGCGAA 20077
Query 31569 ACCTTCTGGCAACCTTCCCACGGGTTGAACGTGTGGTCGCACCATTCGAT 31618
||||||||||| || |||||||| || ||||||||||||||||| || ||
Sbjct 20078 ACCTTCTGGCATCCCTCCCACGGATTAAACGTGTGGTCGCACCACTCAAT 20127
>seq17619
Length=248000
Score = 91.5 bits (100), Expect = 5e-14
Identities = 121/168 (72%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 4769 CATCGAGTACACCGTCGAAACCGGCTTCACGAACAACGCAGCGGCAGTAGCCGAAGGCGC 4828
|||||||| |||| || || |||||||| || ||||| ||| | || || ||||| ||
Sbjct 34752 CATCGAGTGGCCCGTAGAGACTGGCTTCACCAATAACGCGGCGCCCGTCGCAGAAGGTGC 34811
Query 4829 ACAGAAACCGACTTCGGATCTGAAGTTCAATCTGAAGAACCAGCCGGTTCGCACGATCGC 4888
||||||| ||||||||||| |||| | ||||| ||| || ||||||||
Sbjct 34812 TGCGAAACCGTATTCGGATCTGACGTTCGACCTGAAATCTGCGCCTGTCGTGACGATCGC 34871
Query 4889 ACATCTGTTCAAGGCGTCGCGTCAGATTCTCGACGATGCGCCGGCACT 4936
|| || ||||||| ||| || ||||| | || || || || || ||
Sbjct 34872 GCACCTCTTCAAGGTGTCTCGACAGATCATGGATGACGCACCCGCGCT 34919
>seq61964
Length=3806
Score = 80.6 bits (88), Expect = 9e-11
Identities = 106/142 (75%), Gaps = 4/142 (3%)
Strand=Plus/Plus
Query 41998 TGATTGTCGTCGCGCGTCTACTTCAGGGATTTTCGGCTGGAGGGGAAATGGGAGGTGCGA 42057
|||| || | ||||| |||| ||||| ||||| || || || || ||||| |||| |
Sbjct 92 TGATCGTGTTGGCGCGATTACTACAGGGCTTTTCTGCCGGTGGCGAGATGGGGAGTGCCA 151
Query 42058 CAGCGTATCTTCG-CGAGCGCGTGCCGGCCGAGCGGCATGG-ATACTACACGAGCTGGAT 42115
| || | |||| ||||| | || |||| || ||| || ||||||| | ||||||||
Sbjct 152 CTGCCT-TCTTGATCGAGCATGCACCCGCCG-GCCGCAAGGCATACTACTCCAGCTGGAT 209
Query 42116 TCAGGCGAGTATCGGGTTCGCG 42137
||||||||| ||||| |||||
Sbjct 210 TCAGGCGAGCATCGGTGTCGCG 231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 175285309501680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |