Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq33366 156 1e-32 seq70604 150 4e-31 seq34609 149 1e-30 seq25926 138 3e-27 seq64865 118 2e-21 seq26065 114 3e-20 seq65209 105 2e-17 seq61258 100 7e-16 seq76267 95.1 3e-14 seq5714 89.7 1e-12 >seq33366 Length=1752596 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || || || || | ||| || || || | || || ||||||||||| || || ||||| Sbjct 780174 CCACCCCTAAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 780115 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||| | || ||||| || || || || ||||| || |||||||| || ||||| || Sbjct 780114 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 780055 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| |||||||| ||||| || || ||||| || | ||| || || || || ||| Sbjct 780054 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 779995 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || ||||| || || || ||||| || || || ||||||||| Sbjct 779994 TCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATTTGCATTTTG 779944 >seq70604 Length=2882449 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | || || || || ||||| || |||||||| | ||| | || ||||| Sbjct 1789371 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 1789430 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| | |||||||| || || || || || |||||||| |||||||| |||||||| Sbjct 1789431 AGTTGCCTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 1789490 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| ||||| || | ||||| || || || ||||| Sbjct 1789491 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTGGACCTCAAGAGTGATGGTCTTC 1789550 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || || || |||||||| ||| Sbjct 1789551 CCCGTTAGGGTCTTCACGAAAATCTGCATCTTG 1789583 >seq34609 Length=2775773 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104352 CTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTA 104411 ||||||| | || || || || ||||| || |||||||| | ||| | || ||||| | Sbjct 2545734 CTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCA 2545793 Query 104412 GTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAA 104471 |||| || ||| |||| || || || || || |||||||| |||||||| |||||||| | Sbjct 2545794 GTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGA 2545853 Query 104472 TCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTAC 104531 |||| || ||||||||||||| ||||| || || ||||| || || || ||||| | Sbjct 2545854 TCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCGACCTCAAGAGTGATGGTCTTCC 2545913 Query 104532 CAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 | || || || || | || |||||||| ||| Sbjct 2545914 CTGTCAGGGTCTTCATGAAAATCTGCATCTTG 2545945 >seq25926 Length=4460019 Score = 138 bits (152), Expect = 3e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| || ||||||| | ||| | || ||||| ||||| || ||| Sbjct 2859500 GTGGACTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCA 2859559 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || || || || |||||||| |||||||| |||||||| ||||| || ||| Sbjct 2859560 GCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTT 2859619 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||||||| ||||| || || ||||| || || || ||||| | || || || Sbjct 2859620 ACATTTTCTGTTGTATCCGAGGGCTCGACCTCAAGAGTGATGGTCTTCCTCGTCAGGGTC 2859679 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || |||||||| ||| Sbjct 2859680 TTCACGAAAATCTGCATGTTG 2859700 >seq64865 Length=1526523 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || || || ||||| || |||||||| | ||| | || |||| ||| Sbjct 730091 AGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTTCAGT 730150 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || |||||||| || || || || || |||||||| |||||| ||| |||| | | Sbjct 730151 TGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAGCTCCTTCCTTACCCTGGACC 730210 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || | ||||||||||||| || ||| || || ||||| | || || ||||| || Sbjct 730211 TTGACCTTTACATTTTCTATGGGATCTGAGGGCTCGACCTCAGGAGTCATGGTCTTCCCC 730270 Query 104534 GTAAGTGTTTTTACAAATATCTGCATTTTG 104563 | || || || || || |||||||| ||| Sbjct 730271 ATCAGGGTCTTCACGAAAATCTGCATCTTG 730300 >seq26065 Length=1373002 Score = 114 bits (126), Expect = 3e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || |||||| | || || ||||| ||||||||||| || ||||| ||||| |||||||| Sbjct 1017593 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCT 1017652 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| | ||||||||||| || ||||| ||| | ||||| || || || | Sbjct 1017653 GCTATATTCTGGCTAAAGAAAAGAGGACTCATGCCTGGACTCACTTTTTCCAATGAGCTC 1017712 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 1017713 ATCAGCAGAGATGAAG 1017728 >seq65209 Length=3338390 Score = 105 bits (116), Expect = 2e-17 Identities = 245/368 (67%), Gaps = 10/368 (3%) Strand=Plus/Plus Query 65635 TTACT-CCAGTAGAACCAAAACCACAGGACCCTCTTTCTGTTATATCTATAGCATCTACA 65693 ||||| ||||| |||||||| || | ||| || ||||| || ||||| | || | Sbjct 2239489 TTACTTCCAGTGGAACCAAAGCCTCCGGAACCCCTTTCAGTGTCATCTAAA--ATTT--- 2239543 Query 65694 GAAAGAGCCTCCCTTATTTCTGGTTGTGCTATTTTTTCAAATATGATTTGAGCTACTCTA 65753 || | ||| ||||||||| | ||| |||| | |||| | || || | Sbjct 2239544 ----GAACTTCCTCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTATGCAGTTCGA 2239599 Query 65754 TCGCCTTTACATATATTAAACTCCTCCTTACCGAAATTAAATATTAATATTCCAACATTA 65813 || || || | | ||||| ||| || || |||||||| | | | |||||||| Sbjct 2239600 TCACCCTTTTTGACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTT 2239659 Query 65814 CCTCTATAGTCTGAATCTATAACACCAGCACCTACATCTATAAAGTAATTATACGCTAAT 65873 |||||||| ||| |||||| |||||||| ||||||||||| |||| || || || Sbjct 2239660 CCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCTGCCAAG 2239719 Query 65874 CCAGATCGGGGAGCTATTCTACCATAATATCCTCTAGGAACTGATATAATCAAATCAGTA 65933 ||||| || ||||| | ||| ||||| | || ||||| | ||| | ||||| Sbjct 2239720 CCAGAACGAGGAGCCACTCTTCCATAGCACCCAGAAGGAAGGGCTATCTGAATGTCAGTT 2239779 Query 65934 AATACCAATTCTTTGTCCATGGGTTGTACGGTATAATCGTACGCGCTATATAGATCATAT 65993 || | | || ||||| ||| |||| || ||||| || || || || || || || Sbjct 2239780 TTCACAAGCACCTTCTCCATCGGTGGTACTGTGTAATCATAGGCACTGTACAGGTCGTAG 2239839 Query 65994 CCTGCAGC 66001 || || || Sbjct 2239840 CCCGCGGC 2239847 >seq61258 Length=1460494 Score = 100 bits (110), Expect = 7e-16 Identities = 152/215 (71%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 104345 CTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCG 104404 || || || ||||| | || || || || ||||| || |||| | | || | || Sbjct 487681 CTCAGCACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTTGGTCAAAGACAT-CCA 487623 Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 ||||| |||||||| ||||||| || || || || || |||||||| | ||||| ||| Sbjct 487622 TCTTCCAGTTGTTTGCCAGCAACGATCAGTCTTTGCTGGTCAGGAGGAACACCTTCCTTA 487563 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 ||||| || || || ||||||||||||| ||||| || | |||| || | || Sbjct 487562 TCCTGGATTTTGGCCTTTACATTTTCTATTGTATCCAAGGGCTTGACCTTGAGAGAGATG 487503 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || || || || || |||||||| Sbjct 487502 CTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 487468 >seq76267 Length=784369 Score = 95.1 bits (104), Expect = 3e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | ||| ||||||||||| || || | || || | || || ||||| | Sbjct 740863 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 740922 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| || ||| | ||| || || || |||||||| | ||| ||||| || ||| Sbjct 740923 AAGAAAAACAACCAAGTCTCTTTCCTCCACGTGTATCATCACTGTACCATGTTCACGTTG 740982 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 | ||||| || ||||| ||| | ||||||||||| Sbjct 740983 TGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACA 741017 >seq5714 Length=4027443 Score = 89.7 bits (98), Expect = 1e-12 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| | ||| || ||||||| || || || || ||||| ||||| ||||||| | Sbjct 697125 CCATCTTCCAATTGCTTGCCAGCAAGGATCAGTCTTTGCTGATCGGGAGGAATTCCTTTT 697184 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 ||||| || ||||| || ||||||||||||| | ||| |||| || || | || Sbjct 697185 TTATCTTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTTGACTTCGGGAGTG 697244 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || | ||| | || || || || | || |||||||| ||| Sbjct 697245 ATGGACTTCCTTGTCAGGGTCTTCATGAAAATCTGCATCTTG 697286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150257752782560