Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq33366 156 1e-32
seq70604 150 4e-31
seq34609 149 1e-30
seq25926 138 3e-27
seq64865 118 2e-21
seq26065 114 3e-20
seq65209 105 2e-17
seq61258 100 7e-16
seq76267 95.1 3e-14
seq5714 89.7 1e-12
>seq33366
Length=1752596
Score = 156 bits (172), Expect = 1e-32
Identities = 173/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| || || || | ||| || || || | || || ||||||||||| || || |||||
Sbjct 780174 CCACCCCTAAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 780115
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
||||| | || ||||| || || || || ||||| || |||||||| || ||||| ||
Sbjct 780114 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 780055
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|| ||||| |||||||| ||||| || || ||||| || | ||| || || || || |||
Sbjct 780054 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 779995
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| || || || ||||| || || || ||||| || || || |||||||||
Sbjct 779994 TCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATTTGCATTTTG 779944
>seq70604
Length=2882449
Score = 150 bits (166), Expect = 4e-31
Identities = 161/213 (76%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|||||||| | || || || || ||||| || |||||||| | ||| | || |||||
Sbjct 1789371 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 1789430
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
||||| | |||||||| || || || || || |||||||| |||||||| ||||||||
Sbjct 1789431 AGTTGCCTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 1789490
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || ||||||||||||| ||||| || | ||||| || || || |||||
Sbjct 1789491 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTGGACCTCAAGAGTGATGGTCTTC 1789550
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| || || || || || || |||||||| |||
Sbjct 1789551 CCCGTTAGGGTCTTCACGAAAATCTGCATCTTG 1789583
>seq34609
Length=2775773
Score = 149 bits (164), Expect = 1e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 104352 CTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTA 104411
||||||| | || || || || ||||| || |||||||| | ||| | || ||||| |
Sbjct 2545734 CTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCA 2545793
Query 104412 GTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAA 104471
|||| || ||| |||| || || || || || |||||||| |||||||| |||||||| |
Sbjct 2545794 GTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGA 2545853
Query 104472 TCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTAC 104531
|||| || ||||||||||||| ||||| || || ||||| || || || ||||| |
Sbjct 2545854 TCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCGACCTCAAGAGTGATGGTCTTCC 2545913
Query 104532 CAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
| || || || || | || |||||||| |||
Sbjct 2545914 CTGTCAGGGTCTTCATGAAAATCTGCATCTTG 2545945
>seq25926
Length=4460019
Score = 138 bits (152), Expect = 3e-27
Identities = 151/201 (75%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || || ||||| || ||||||| | ||| | || ||||| ||||| || |||
Sbjct 2859500 GTGGACTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCA 2859559
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || || || || || |||||||| |||||||| |||||||| ||||| || |||
Sbjct 2859560 GCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTT 2859619
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||||||| ||||| || || ||||| || || || ||||| | || || ||
Sbjct 2859620 ACATTTTCTGTTGTATCCGAGGGCTCGACCTCAAGAGTGATGGTCTTCCTCGTCAGGGTC 2859679
Query 104543 TTTACAAATATCTGCATTTTG 104563
|| || || |||||||| |||
Sbjct 2859680 TTCACGAAAATCTGCATGTTG 2859700
>seq64865
Length=1526523
Score = 118 bits (130), Expect = 2e-21
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413
||||| | || || || || ||||| || |||||||| | ||| | || |||| |||
Sbjct 730091 AGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTTCAGT 730150
Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473
|| || |||||||| || || || || || |||||||| |||||| ||| |||| | |
Sbjct 730151 TGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAGCTCCTTCCTTACCCTGGACC 730210
Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533
|| | ||||||||||||| || ||| || || ||||| | || || ||||| ||
Sbjct 730211 TTGACCTTTACATTTTCTATGGGATCTGAGGGCTCGACCTCAGGAGTCATGGTCTTCCCC 730270
Query 104534 GTAAGTGTTTTTACAAATATCTGCATTTTG 104563
| || || || || || |||||||| |||
Sbjct 730271 ATCAGGGTCTTCACGAAAATCTGCATCTTG 730300
>seq26065
Length=1373002
Score = 114 bits (126), Expect = 3e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
|| |||||| | || || ||||| ||||||||||| || ||||| ||||| ||||||||
Sbjct 1017593 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCT 1017652
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
||||| || ||| | ||||||||||| || ||||| ||| | ||||| || || || |
Sbjct 1017653 GCTATATTCTGGCTAAAGAAAAGAGGACTCATGCCTGGACTCACTTTTTCCAATGAGCTC 1017712
Query 269246 ATAAGCAGGGACGAAG 269261
|| ||||| || ||||
Sbjct 1017713 ATCAGCAGAGATGAAG 1017728
>seq65209
Length=3338390
Score = 105 bits (116), Expect = 2e-17
Identities = 245/368 (67%), Gaps = 10/368 (3%)
Strand=Plus/Plus
Query 65635 TTACT-CCAGTAGAACCAAAACCACAGGACCCTCTTTCTGTTATATCTATAGCATCTACA 65693
||||| ||||| |||||||| || | ||| || ||||| || ||||| | || |
Sbjct 2239489 TTACTTCCAGTGGAACCAAAGCCTCCGGAACCCCTTTCAGTGTCATCTAAA--ATTT--- 2239543
Query 65694 GAAAGAGCCTCCCTTATTTCTGGTTGTGCTATTTTTTCAAATATGATTTGAGCTACTCTA 65753
|| | ||| ||||||||| | ||| |||| | |||| | || || |
Sbjct 2239544 ----GAACTTCCTCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTATGCAGTTCGA 2239599
Query 65754 TCGCCTTTACATATATTAAACTCCTCCTTACCGAAATTAAATATTAATATTCCAACATTA 65813
|| || || | | ||||| ||| || || |||||||| | | | ||||||||
Sbjct 2239600 TCACCCTTTTTGACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTT 2239659
Query 65814 CCTCTATAGTCTGAATCTATAACACCAGCACCTACATCTATAAAGTAATTATACGCTAAT 65873
|||||||| ||| |||||| |||||||| ||||||||||| |||| || || ||
Sbjct 2239660 CCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCTGCCAAG 2239719
Query 65874 CCAGATCGGGGAGCTATTCTACCATAATATCCTCTAGGAACTGATATAATCAAATCAGTA 65933
||||| || ||||| | ||| ||||| | || ||||| | ||| | |||||
Sbjct 2239720 CCAGAACGAGGAGCCACTCTTCCATAGCACCCAGAAGGAAGGGCTATCTGAATGTCAGTT 2239779
Query 65934 AATACCAATTCTTTGTCCATGGGTTGTACGGTATAATCGTACGCGCTATATAGATCATAT 65993
|| | | || ||||| ||| |||| || ||||| || || || || || || ||
Sbjct 2239780 TTCACAAGCACCTTCTCCATCGGTGGTACTGTGTAATCATAGGCACTGTACAGGTCGTAG 2239839
Query 65994 CCTGCAGC 66001
|| || ||
Sbjct 2239840 CCCGCGGC 2239847
>seq61258
Length=1460494
Score = 100 bits (110), Expect = 7e-16
Identities = 152/215 (71%), Gaps = 1/215 (0%)
Strand=Plus/Minus
Query 104345 CTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCG 104404
|| || || ||||| | || || || || ||||| || |||| | | || | ||
Sbjct 487681 CTCAGCACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTTGGTCAAAGACAT-CCA 487623
Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464
||||| |||||||| ||||||| || || || || || |||||||| | ||||| |||
Sbjct 487622 TCTTCCAGTTGTTTGCCAGCAACGATCAGTCTTTGCTGGTCAGGAGGAACACCTTCCTTA 487563
Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524
||||| || || || ||||||||||||| ||||| || | |||| || | ||
Sbjct 487562 TCCTGGATTTTGGCCTTTACATTTTCTATTGTATCCAAGGGCTTGACCTTGAGAGAGATG 487503
Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||| || || || || || || || ||||||||
Sbjct 487502 CTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 487468
>seq76267
Length=784369
Score = 95.1 bits (104), Expect = 3e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553
|||||||| | ||| ||||||||||| || || | || || | || || ||||| |
Sbjct 740863 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 740922
Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613
|||||| || ||| | ||| || || || |||||||| | ||| ||||| || |||
Sbjct 740923 AAGAAAAACAACCAAGTCTCTTTCCTCCACGTGTATCATCACTGTACCATGTTCACGTTG 740982
Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648
| ||||| || ||||| ||| | |||||||||||
Sbjct 740983 TGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACA 741017
>seq5714
Length=4027443
Score = 89.7 bits (98), Expect = 1e-12
Identities = 117/162 (72%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|| ||||| | ||| || ||||||| || || || || ||||| ||||| ||||||| |
Sbjct 697125 CCATCTTCCAATTGCTTGCCAGCAAGGATCAGTCTTTGCTGATCGGGAGGAATTCCTTTT 697184
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
||||| || ||||| || ||||||||||||| | ||| |||| || || | ||
Sbjct 697185 TTATCTTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTTGACTTCGGGAGTG 697244
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| | ||| | || || || || | || |||||||| |||
Sbjct 697245 ATGGACTTCCTTGTCAGGGTCTTCATGAAAATCTGCATCTTG 697286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1150257752782560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |