Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq23781 239 3e-58 >seq23781 Length=1882226 Score = 239 bits (264), Expect = 3e-58 Identities = 401/579 (69%), Gaps = 1/579 (0%) Strand=Plus/Minus Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446 |||| || || || || || | || |||||||||||||| || || | ||||| ||||| Sbjct 25461 TGGGGAAAGGCCTTGGTTCTCGCTGAAGCTGAGTCTTCAGTGGCTCGATGTGATTCAGGT 25402 Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506 | | ||| || |||||||||||||| || || || || || | || | || | || | Sbjct 25401 AAATGTGTGCATCTCCCAGAGTGTGTACGAAGTCACCTGGCTTCAGGTCCGTGATGTGTG 25342 Query 25507 CCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGT 25566 | |||||||| ||||| || ||||||||| || || ||||| || || | ||||||| Sbjct 25341 CGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAGGGCACACCCAGGCCCATGT 25282 Query 25567 CCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACAC 25626 | |||||||| ||||| | ||| || || ||||| | | |||||| ||||| || Sbjct 25281 -CTCCCGACCTTTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGGCAG 25223 Query 25627 ATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACG 25686 | || || ||| || || || || || || | ||||| || ||||| || |||| | Sbjct 25222 AGGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATCTTTTGGATTCCAAGCACACAGG 25163 Query 25687 ATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCC 25746 ||||| | |||| | |||||| |||| || |||||||| ||||| Sbjct 25162 ATGATTCTTCTGTTGTTAGGGTTGGTTTTGATTGTGTCGATCACTTTTTGCAGTTGATCT 25103 Query 25747 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCAC 25806 || || || || || |||| ||| || |||| || || || |||| ||||||| Sbjct 25102 ACTCCTTGACCTGAATAATCTGAATCCATATCTTTGTATTCAGCCCCAAAATGCCTCCAC 25043 Query 25807 TGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCC 25866 ||||| || || ||||| || | || || || | || | |||||| |||| Sbjct 25042 TGGAAGCCATAAACCGGGCCCAAATCCCCTTCAGCTCTATTGGAGAAGCCCAAGCCATCC 24983 Query 25867 AAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTG 25926 || ||||||| ||| || ||||| ||||| || || || ||||| || || || || Sbjct 24982 AAGAAGTCTCGGGACCCGTTGGCATCCCAAATTTTCACTCCCTTGGAAGACAGTTCCTTA 24923 Query 25927 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCC 25965 | ||| ||||| || ||| |||||||||| |||| || Sbjct 24922 GCGTTGGTGGATCCCTTGATAAACCACAGCAACTCCTCC 24884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339817075584360