Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_005857.1 Length=51601 Score E Sequences producing significant alignments: (Bits) Value seq52723 253 7e-63 seq51123 82.4 3e-11 >seq52723 Length=2669 Score = 253 bits (280), Expect = 7e-63 Identities = 608/911 (67%), Gaps = 18/911 (2%) Strand=Plus/Plus Query 5078 GTCTCGATGGCCATTTCAACTGCCGCTGGTTCCGGCGGGGTACTTATTCCCCAGAATATT 5137 || || ||||| ||| ||| | || || || || || | | | | || || |||| | Sbjct 954 GTATCAATGGCAATTGAAACCTCGGCAGGCTCTGGTGGTGCATTAGTGCCACAAAATACT 1013 Query 5138 CACAGCGAAGTGATCGAGTTGCTGCGTGATCGCACCATCGTTCGTAAGTTAGGTGCTCGC 5197 | ||||| || ||||| |||| ||||||| ||||||||| | || || || Sbjct 1014 GCGATGGAAGTAATTGAGTTATTGCGCAATCGCACTATCGTTCGTCGCCTTGGGGCGCGT 1073 Query 5198 TCAATTCCGTTGCCGAACGGCAACATGTCGTTACCGCGTCTGGCCGGTGGTGCAACGGCG 5257 || | || ||||| || ||||||||| | ||||| ||| || |||||| | || || Sbjct 1074 TCGGTGCCATTGCCTAATGGCAACATGACATTACCACGTATGAGCGGTGGCTCGACATCG 1133 Query 5258 AGTTATACCGGTGAAAACCAGGATGCCAAAGTTTCCGAAGCACGTTTTGATGATGTGAAA 5317 | ||| |||||| | |||| | || | || | | || ||||| || Sbjct 1134 ACTTACGTTGGTGAAGGCAGCGATGTGTTGGCATCAAATCCAGATCTGGACGATGTAAAG 1193 Query 5318 CTGACGGCGAAAACCATGATTGCTATGGTCCCGATCTCTAACGCACTGATTGGTCGCGCT 5377 ||| | || ||||| ||||| | | || || || || ||| | ||||||| | || Sbjct 1194 CTGTCAGCAAAAACGATGATCACCTTAGTGCCAATTTCAAACCAATTGATTGGCCAAGCA 1253 Query 5378 GGGTTTAACGTCGAGCAGCTGGTCCTGCAGGATATTCTGACAGCCATCTCCGTTCGTGAA 5437 || |||||| || ||| | ||||| || || | | | || |||| |||||| Sbjct 1254 GGTCGTAACGTTGAAAGCCTGATTCTGCAAGACATGATCGCCTCAATGGCCGTGCGTGAA 1313 Query 5438 GATAAAGCATTTATGCGTGATGATGGCACCGGCGACACCCCAATTGGTATGAAAGCGCGC 5497 |||||||| ||| | |||||||||||| | | || |||| || | ||| | Sbjct 1314 GATAAAGCGTTTTTACGTGATGATGGCTCAGCATCAACACCAACAGGCTTTAAAAAGACT 1373 Query 5498 GCA--ACT--CAGTG-GAACCGCTTACTGCCTTGGGCGGCAGACGCTGCAGTTAATCTGG 5552 ||| | | || | |||| | | |||||| | | | |||| | || ||| Sbjct 1374 GCAGAAGTTGCATTAAGAACAGTT-----CCTTGGTCTGGTGT---TGCA--TCAT-TGG 1422 Query 5553 ATACGATTGATACGTATCTGGACTCCATCATTCTGATGTCGATGGATGGTAACAGCAACA 5612 || || ||| | | || || | | ||| | | | |||||| |||| || | Sbjct 1423 CCACTATCGATGCATTCCTTGATAGCTTGATTTTAAAGCTGATGGAATCTAACTCCATGA 1482 Query 5613 TGATCAGCAGC-GGTTGGGGTATGTCGAACCGTACCTATATGAAGCTGTTTGGCTTGCGC 5671 |||||| || | ||||||||| ||||| ||||| || ||||||||||||||| |||| Sbjct 1483 TGATCA-CACCTGGTTGGGGTTTGTCGCCACGTACTTACATGAAGCTGTTTGGCCTGCGT 1541 Query 5672 GACGGCAACGGTAATAAAGTCTACCCGGAAATGGCGCAAGGGATGCTGAAGGGTTATCCA 5731 || || ||||| |||||||| ||||| |||||||| |||| | ||||| || | || Sbjct 1542 GATGGTAACGGCAATAAAGTTTACCCAGAAATGGCAACAGGGTTACTGAAAGGCTTCCCT 1601 Query 5732 ATTCAGCGTACCAGCGCGATTCCGGCGAACCTCGGAGAGGGCGGGAAAGAGTCAGAAATT 5791 || || | |||| | | || || | ||||| || ||| || || || || ||| Sbjct 1602 ATCCAACACACCAACACCATCCCATCAAACCTAGGTACAGGCACCAACGAATCTGAGATT 1661 Query 5792 TACTTCGCTGACTTTAACGATGTAGTCATCGGGGAAGACGGCAACATGAAGGTCGATTTC 5851 |||||||| || |||||||||||| | ||||| ||| ||| || | |||||||| Sbjct 1662 TACTTCGCAGATTTTAACGATGTACTTATCGGTGAAAGCGGTAATTTCTCAATCGATTTC 1721 Query 5852 TCCAAAGAGGCCTCCTATATCGATACCGATGGCAAGCTGGTTTCCGCGTTCTCCCGTAAC 5911 | || || |||| | ||| |||| || || || | || || || ||| ||| Sbjct 1722 AGCCGTGAAGCAACCTACAAAGATGCCGAAGGTAATTTGATCTCTGCCTTTAGCCGCAAC 1781 Query 5912 CAGTCGCTGATCCGCGTTGTAACTGAACACGATATTGGTTTCCGTCACCCGGAAGGTCTG 5971 || || | ||||| || ||||| || ||||||||||||||||||||||| ||||| || Sbjct 1782 CAATCATTAATCCGTGTGGTAACGGACCACGATATTGGTTTCCGTCACCCAGAAGGCCTA 1841 Query 5972 GTGCTGGGTAC 5982 | |||||||| Sbjct 1842 GCACTGGGTAC 1852 >seq51123 Length=754 Score = 82.4 bits (90), Expect = 3e-11 Identities = 116/161 (72%), Gaps = 4/161 (2%) Strand=Plus/Plus Query 3146 TTCTCTGTGGCGCTGCTGCAGGAGGGTATGAGCTACAAGCAGATGTCGCAGGATAACGAG 3205 ||||| || ||| ||||||| || || ||||||||||| ||| | ||| ||||||||| Sbjct 548 TTCTCAGTTGCGATGCTGCAAGAAGGAATGAGCTACAAACAGTTATCGATGGATAACGAA 607 Query 3206 AAAGCGCAGCTGCT--GCAGTCGCGTCAGTGGGGCGTGGAAGAGGTTTGCCGCCTCTACA 3263 ||||| || |||| ||||| | | | || | | || || || ||| | |||| Sbjct 608 AAAGCCCAATTGCTTGAAAGTCGTGGC--TTTGGTATTGCGGAAGTGTGTCGCTTATACA 665 Query 3264 AAATCCCCCCACACATGGTGCAAATGCTGGCGAAAGCGACC 3304 |||| || | ||||||||||| ||| || |||| | ||| Sbjct 666 AAATTCCGCTGCACATGGTGCAGATGACGGAGAAAACTACC 706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164850099655920