Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_005857.1
Length=51601
Score E
Sequences producing significant alignments: (Bits) Value
seq52723 253 7e-63
seq51123 82.4 3e-11
>seq52723
Length=2669
Score = 253 bits (280), Expect = 7e-63
Identities = 608/911 (67%), Gaps = 18/911 (2%)
Strand=Plus/Plus
Query 5078 GTCTCGATGGCCATTTCAACTGCCGCTGGTTCCGGCGGGGTACTTATTCCCCAGAATATT 5137
|| || ||||| ||| ||| | || || || || || | | | | || || |||| |
Sbjct 954 GTATCAATGGCAATTGAAACCTCGGCAGGCTCTGGTGGTGCATTAGTGCCACAAAATACT 1013
Query 5138 CACAGCGAAGTGATCGAGTTGCTGCGTGATCGCACCATCGTTCGTAAGTTAGGTGCTCGC 5197
| ||||| || ||||| |||| ||||||| ||||||||| | || || ||
Sbjct 1014 GCGATGGAAGTAATTGAGTTATTGCGCAATCGCACTATCGTTCGTCGCCTTGGGGCGCGT 1073
Query 5198 TCAATTCCGTTGCCGAACGGCAACATGTCGTTACCGCGTCTGGCCGGTGGTGCAACGGCG 5257
|| | || ||||| || ||||||||| | ||||| ||| || |||||| | || ||
Sbjct 1074 TCGGTGCCATTGCCTAATGGCAACATGACATTACCACGTATGAGCGGTGGCTCGACATCG 1133
Query 5258 AGTTATACCGGTGAAAACCAGGATGCCAAAGTTTCCGAAGCACGTTTTGATGATGTGAAA 5317
| ||| |||||| | |||| | || | || | | || ||||| ||
Sbjct 1134 ACTTACGTTGGTGAAGGCAGCGATGTGTTGGCATCAAATCCAGATCTGGACGATGTAAAG 1193
Query 5318 CTGACGGCGAAAACCATGATTGCTATGGTCCCGATCTCTAACGCACTGATTGGTCGCGCT 5377
||| | || ||||| ||||| | | || || || || ||| | ||||||| | ||
Sbjct 1194 CTGTCAGCAAAAACGATGATCACCTTAGTGCCAATTTCAAACCAATTGATTGGCCAAGCA 1253
Query 5378 GGGTTTAACGTCGAGCAGCTGGTCCTGCAGGATATTCTGACAGCCATCTCCGTTCGTGAA 5437
|| |||||| || ||| | ||||| || || | | | || |||| ||||||
Sbjct 1254 GGTCGTAACGTTGAAAGCCTGATTCTGCAAGACATGATCGCCTCAATGGCCGTGCGTGAA 1313
Query 5438 GATAAAGCATTTATGCGTGATGATGGCACCGGCGACACCCCAATTGGTATGAAAGCGCGC 5497
|||||||| ||| | |||||||||||| | | || |||| || | ||| |
Sbjct 1314 GATAAAGCGTTTTTACGTGATGATGGCTCAGCATCAACACCAACAGGCTTTAAAAAGACT 1373
Query 5498 GCA--ACT--CAGTG-GAACCGCTTACTGCCTTGGGCGGCAGACGCTGCAGTTAATCTGG 5552
||| | | || | |||| | | |||||| | | | |||| | || |||
Sbjct 1374 GCAGAAGTTGCATTAAGAACAGTT-----CCTTGGTCTGGTGT---TGCA--TCAT-TGG 1422
Query 5553 ATACGATTGATACGTATCTGGACTCCATCATTCTGATGTCGATGGATGGTAACAGCAACA 5612
|| || ||| | | || || | | ||| | | | |||||| |||| || |
Sbjct 1423 CCACTATCGATGCATTCCTTGATAGCTTGATTTTAAAGCTGATGGAATCTAACTCCATGA 1482
Query 5613 TGATCAGCAGC-GGTTGGGGTATGTCGAACCGTACCTATATGAAGCTGTTTGGCTTGCGC 5671
|||||| || | ||||||||| ||||| ||||| || ||||||||||||||| ||||
Sbjct 1483 TGATCA-CACCTGGTTGGGGTTTGTCGCCACGTACTTACATGAAGCTGTTTGGCCTGCGT 1541
Query 5672 GACGGCAACGGTAATAAAGTCTACCCGGAAATGGCGCAAGGGATGCTGAAGGGTTATCCA 5731
|| || ||||| |||||||| ||||| |||||||| |||| | ||||| || | ||
Sbjct 1542 GATGGTAACGGCAATAAAGTTTACCCAGAAATGGCAACAGGGTTACTGAAAGGCTTCCCT 1601
Query 5732 ATTCAGCGTACCAGCGCGATTCCGGCGAACCTCGGAGAGGGCGGGAAAGAGTCAGAAATT 5791
|| || | |||| | | || || | ||||| || ||| || || || || |||
Sbjct 1602 ATCCAACACACCAACACCATCCCATCAAACCTAGGTACAGGCACCAACGAATCTGAGATT 1661
Query 5792 TACTTCGCTGACTTTAACGATGTAGTCATCGGGGAAGACGGCAACATGAAGGTCGATTTC 5851
|||||||| || |||||||||||| | ||||| ||| ||| || | ||||||||
Sbjct 1662 TACTTCGCAGATTTTAACGATGTACTTATCGGTGAAAGCGGTAATTTCTCAATCGATTTC 1721
Query 5852 TCCAAAGAGGCCTCCTATATCGATACCGATGGCAAGCTGGTTTCCGCGTTCTCCCGTAAC 5911
| || || |||| | ||| |||| || || || | || || || ||| |||
Sbjct 1722 AGCCGTGAAGCAACCTACAAAGATGCCGAAGGTAATTTGATCTCTGCCTTTAGCCGCAAC 1781
Query 5912 CAGTCGCTGATCCGCGTTGTAACTGAACACGATATTGGTTTCCGTCACCCGGAAGGTCTG 5971
|| || | ||||| || ||||| || ||||||||||||||||||||||| ||||| ||
Sbjct 1782 CAATCATTAATCCGTGTGGTAACGGACCACGATATTGGTTTCCGTCACCCAGAAGGCCTA 1841
Query 5972 GTGCTGGGTAC 5982
| ||||||||
Sbjct 1842 GCACTGGGTAC 1852
>seq51123
Length=754
Score = 82.4 bits (90), Expect = 3e-11
Identities = 116/161 (72%), Gaps = 4/161 (2%)
Strand=Plus/Plus
Query 3146 TTCTCTGTGGCGCTGCTGCAGGAGGGTATGAGCTACAAGCAGATGTCGCAGGATAACGAG 3205
||||| || ||| ||||||| || || ||||||||||| ||| | ||| |||||||||
Sbjct 548 TTCTCAGTTGCGATGCTGCAAGAAGGAATGAGCTACAAACAGTTATCGATGGATAACGAA 607
Query 3206 AAAGCGCAGCTGCT--GCAGTCGCGTCAGTGGGGCGTGGAAGAGGTTTGCCGCCTCTACA 3263
||||| || |||| ||||| | | | || | | || || || ||| | ||||
Sbjct 608 AAAGCCCAATTGCTTGAAAGTCGTGGC--TTTGGTATTGCGGAAGTGTGTCGCTTATACA 665
Query 3264 AAATCCCCCCACACATGGTGCAAATGCTGGCGAAAGCGACC 3304
|||| || | ||||||||||| ||| || |||| | |||
Sbjct 666 AAATTCCGCTGCACATGGTGCAGATGACGGAGAAAACTACC 706
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 164850099655920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |