Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq42862 84.2 1e-11 seq3292 84.2 1e-11 seq63175 82.4 4e-11 seq57787 82.4 4e-11 >seq42862 Length=585711 Score = 84.2 bits (92), Expect = 1e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| |||||| | |||||||||| ||||||| ||||||||||||| ||||||| || Sbjct 385066 AAAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAAC 385125 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 385126 CAACTGAGCTAACCGGCC 385143 Score = 84.2 bits (92), Expect = 1e-11 Identities = 73/92 (79%), Gaps = 7/92 (8%) Strand=Plus/Plus Query 11445 AAAAATCAAA-------TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||||||||| ||||||| | |||||||||| ||||||| |||||||||| Sbjct 386762 AAAAATCAAAGACAACCTTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAG 386821 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||| |||||||||||||| |||| Sbjct 386822 CACCACGCTCTAACCAACTGAGCTAACCGGCC 386853 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 399221 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 399280 Query 11528 CC 11529 || Sbjct 399281 CC 399282 >seq3292 Length=7324000 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 3732307 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 3732248 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 3732247 CTGAGCTAACCGGCC 3732233 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 3751546 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 3751605 Query 11528 CC 11529 || Sbjct 3751606 CC 3751607 >seq63175 Length=1720526 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 18745 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 18686 Query 11528 CC 11529 || Sbjct 18685 CC 18684 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 221445 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 221504 Query 11528 CC 11529 || Sbjct 221505 CC 221506 >seq57787 Length=1106571 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 451365 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 451306 Query 11528 CC 11529 || Sbjct 451305 CC 451304 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261244787036320