Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq61355 141 1e-28 seq24950 141 1e-28 seq62382 93.3 5e-14 >seq61355 Length=1802311 Score = 141 bits (156), Expect = 1e-28 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| |||| |||||||||||||||||||||||||| || | Sbjct 1273439 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAGGAGGTGA 1273380 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 ||||||||||||| || || | || | ||| |||||||||||||| ||||| |||| Sbjct 1273379 TGCCACAGGCTGAGAACCATGGGCCTGCCATCAAGGAGCACGTGAACTCGCTGGGGGAGA 1273320 Query 10260 ATCTAAAGACCCTAAGGCTTCGCTTGCG 10287 | || |||||||| |||| || |||| Sbjct 1273319 AGCTGAAGACCCTCCGGCTGCGGCTGCG 1273292 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || | || |||||||||||||||||||| |||||||| || || ||||| | Sbjct 1271105 AGCTCCAAGAGAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 1271046 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||| | |||||||| | ||| || Sbjct 1271045 TAGAATCCTACATGACAACGAAGAT 1271021 >seq24950 Length=757 Score = 141 bits (156), Expect = 1e-28 Identities = 315/470 (67%), Gaps = 2/470 (0%) Strand=Plus/Minus Query 58598 GCGGCCGGTCAGCGTGGCGGCCTACATGGAGCCCTGGCACAGCCAGATCTTTAAGTTTCT 58657 |||||| || |||||||| || ||||||||| |||||| | |||||| |||| || Sbjct 469 GCGGCCCGTTAGCGTGGCCGCGTACATGGAGGTGTGGCACTGTCAGATCCAGGAGTTCCT 410 Query 58658 GGAGACGAAGGTCCCCGAGAACCACGAAAGGTGCCCGGGCATCTTCACGGGGCTCTTTGT 58717 || | ||| | || ||||||| | | | ||| | ||||| | |||||||| | Sbjct 409 GGCGGTCAAGCTGCCGGAGAACCCCAACCGCTGCGCCTCCATCTACCAGGGGCTCTGCAT 350 Query 58718 CCCCGAGCTCTTCTTCAAGCTGTTCCGGGACGAGCCCTGGTCGGACTGGTACCTGTTTGA 58777 ||| || ||||| | || || ||| || || | | |||||||||||| | Sbjct 349 ACCCAGCCTGTTCTTTGACAAGTGCCTGGAGGACTCCAGCCAGCCCTGGTACCTGTTC-A 291 Query 58778 GCCCC-AGAACGCCGGAAACCTGGAGAAGCTCTACGGGGAGGAGTTTGAGCGGGAGTACT 58836 |||| ||| || || | || | ||||||||||||| ||| | ||||||| Sbjct 290 GCCCGGAGAGGGCGGGCAGGCTCCCCCATCTCTACGGGGAGGCGTTCAATGAGGAGTACG 231 Query 58837 ATCGGCTGGTGACGGAGGGCAAGTTTTGTGGGCGGGTCTCCATCAAGTCCCTGATGTTCT 58896 | ||||||| | ||| ||||||| |||| ||| ||||||||||||| | || | Sbjct 230 AGGGGCTGGTCAGGGACGGCAAGTACGTGGGGCAGGTGATCATCAAGTCCCTGCTCTTTT 171 Query 58897 CCATCGTCAACTGCGCCGTCAAGGCCGGCAGCCCCTTCATCCTGCTGAAGGAGGCCTGCA 58956 ||||| |||| | ||||| | || ||||| |||| | ||||| ||||| | Sbjct 170 CCATCATCAATGCCATTATCAAGACGGGGTCCCCCTACATCATCTACAAGGACGCCTGTA 111 Query 58957 ACGCCCACTTTTGGCGCGACCTGCAGGGCGAGGCCATGAACTCGGCCAATCTGTGCGCTG 59016 |||| ||| ||| || || ||| ||||| ||||||||| || ||||| | Sbjct 110 ACGCGCACCACTGGAAGGAGATGTGCGGCCGCGCCATCGCCTCGGCCAACCTCTGCGCCG 51 Query 59017 AGGTGCTGCAGCCCTCGAGGGAGACGGTGGCCACCTGCAACCTGGCCAAC 59066 |||| | ||| | || | | | ||| ||||||| ||||| || ||| Sbjct 50 AGGTCATCCAGTACCCGGGCGCGGACGTGTCCACCTGTAACCTAGCTAAC 1 >seq62382 Length=15000 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 10151 GGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAATGCCACAGGCT 10210 |||||| |||||||||| |||||||| ||||||||||| || || |||||||| || ||| Sbjct 7090 GGATGTGAGGCCCTGTCAGAAATGATTCAGTTTTACCTCGAAGAGGTAATGCCCCAAGCT 7149 Query 10211 GAAAATCAGGACCCCC 10226 ||||||| ||| |||| Sbjct 7150 GAAAATCTGGAACCCC 7165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546850158003200