Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq75383 127 2e-24
seq65209 105 6e-18
seq6493 87.8 2e-12
>seq75383
Length=1910755
Score = 127 bits (140), Expect = 2e-24
Identities = 171/238 (72%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 94770 AATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGT 94829
|| || | || ||||| ||||| |||| |||| ||||| ||| || ||||| || | ||
Sbjct 170155 AACTTAAAACACCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGT 170096
Query 94830 TATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889
| || || || ||| ||| ||||||||||| ||| ||||||| | || ||||
Sbjct 170095 TGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCT 170036
Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949
| ||||| || || || |||||||| | || || ||||||||| ||| ||||||
Sbjct 170035 GGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAC 169976
Query 94950 CGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| | || || || | |||||||| || || || | || ||||| |||||||||||
Sbjct 169975 TGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169918
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||| | || | |||| ||||| ||| || || || || | ||| || || |
Sbjct 169004 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 168945
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| ||| ||||||||||| ||| ||||||| || || ||||| ||||| ||
Sbjct 168944 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 168885
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| |||||||| || | || || ||||||| ||| |||||| | || ||
Sbjct 168884 ATGCCTTCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTCACTCGGCTCCACC 168825
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | ||||||||||| ||||| || || || ||||||||||||||
Sbjct 168824 TCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCAT 168778
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||| | || | |||| ||||| ||| || ||||| || | ||| || || |
Sbjct 169232 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 169173
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| ||| ||||||||||| ||| ||||||| | || ||||| ||||| ||
Sbjct 169172 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 169113
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || |||||||| | || || ||||||||| ||| |||||| | | || ||
Sbjct 169112 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 169053
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | |||||||| || || || | || ||||| |||||||||||
Sbjct 169052 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169006
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||| | || | |||| ||||| ||| || ||||| || | ||| || || |
Sbjct 169460 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 169401
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| ||| ||||||||||| ||| ||||||| | || ||||| ||||| ||
Sbjct 169400 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 169341
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || |||||||| | || || ||||||||| ||| |||||| | | || ||
Sbjct 169340 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 169281
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | |||||||| || || || | || ||||| |||||||||||
Sbjct 169280 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169234
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||| | || | |||| ||||| ||| || ||||| || | ||| || || |
Sbjct 169688 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 169629
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| ||| ||||||||||| ||| ||||||| | || ||||| ||||| ||
Sbjct 169628 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 169569
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || |||||||| | || || ||||||||| ||| |||||| | | || ||
Sbjct 169568 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 169509
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | |||||||| || || || | || ||||| |||||||||||
Sbjct 169508 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169462
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||| | || | |||| ||||| ||| || ||||| || | ||| || || |
Sbjct 169916 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 169857
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| ||| ||||||||||| ||| ||||||| | || ||||| ||||| ||
Sbjct 169856 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 169797
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || |||||||| | || || ||||||||| ||| |||||| | | || ||
Sbjct 169796 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 169737
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | |||||||| || || || | || ||||| |||||||||||
Sbjct 169736 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169690
>seq65209
Length=3338390
Score = 105 bits (116), Expect = 6e-18
Identities = 222/328 (68%), Gaps = 6/328 (2%)
Strand=Plus/Plus
Query 43609 GATCTTCTTCCAGTTCAGGGTAAGATATCTTTTCACAAATGAGCTGGGCGATTCTGTCTC 43668
|| |||| || | ||| |||||| ||||| |||||||||||||| || ||| || |
Sbjct 2239544 GAACTTCCTCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTATGCAGTTCGATCAC 2239603
Query 43669 CCTGCAGCACGTAAAAAGTGTGCTTATCGTGGTTGAATAGCACCACGCCCACGTTTCCCC 43728
||| || | ||| | | || | || || || || || || || ||||| |
Sbjct 2239604 CCTTTTTGACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTC 2239663
Query 43729 TATAGTCTTCGTCTATTACGCCCGCGCCTACGTCTATTCCGTGACGTACTGCCAAGCCTG 43788
|||| ||||| ||||| || || || ||||| ||||| ||| | |||||||||| |
Sbjct 2239664 TATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCTGCCAAGCCAG 2239723
Query 43789 ATCTGGCGGCCACCCTGCCATAATGTCCGTGAGGCACGGCTACCCGTATGTCCGTTTTTA 43848
| | | ||||| || ||||| || ||| | ||||| | | ||||| ||||| |
Sbjct 2239724 AACGAGGAGCCACTCTTCCATAGCACCCAGAAGGAAGGGCTATCTGAATGTCAGTTTTCA 2239783
Query 43849 CGAG-GCTGTAGCCTTTG--GGTTCTATGGCCAAATCTTGGGCGCTGTACAGATCGTACC 43905
| || | | || | | ||| || || |||| | ||| |||||||| ||||| |
Sbjct 2239784 CAAGCACCTTCTCCATCGGTGGTACTGTG---TAATCATAGGCACTGTACAGGTCGTAGC 2239840
Query 43906 CGGCGGAGAGCTTGGATCCTTTGGTGGG 43933
| |||| | || ||| || ||||||||
Sbjct 2239841 CCGCGGCGCGCACGGACCCCTTGGTGGG 2239868
>seq6493
Length=163338
Score = 87.8 bits (96), Expect = 2e-12
Identities = 218/328 (66%), Gaps = 6/328 (2%)
Strand=Plus/Plus
Query 43609 GATCTTCTTCCAGTTCAGGGTAAGATATCTTTTCACAAATGAGCTGGGCGATTCTGTCTC 43668
|| |||| || | ||| |||||| ||||| ||||||||||||||| || |||| || |
Sbjct 143113 GAACTTCCTCTATTTCTGGGTAAAATATCCATTCACAAATGAGCTGTGCAATTCGATCAC 143172
Query 43669 CCTGCAGCACGTAAAAAGTGTGCTTATCGTGGTTGAATAGCACCACGCCCACGTTTCCCC 43728
||| || | ||| | | || | || || || || || || || ||| | |
Sbjct 143173 CCTTTTTGACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTACTC 143232
Query 43729 TATAGTCTTCGTCTATTACGCCCGCGCCTACGTCTATTCCGTGACGTACTGCCAAGCCTG 43788
|||| ||||| ||||| || || || |||| ||||| ||| | |||||||| |
Sbjct 143233 TATAATCTTCATCTATGACACCAGCTTCTACATCTATGAAGTGTTTTGTTGCCAAGCTAG 143292
Query 43789 ATCTGGCGGCCACCCTGCCATAATGTCCGTGAGGCACGGCTACCCGTATGTCCGTTTTTA 43848
| | | ||| | || ||||| || ||| | ||||| | | ||||| ||||| |
Sbjct 143293 AACGAGGAGCCGCTCTTCCATAGCACCCAGAAGGAAGGGCTATCTGAATGTCAGTTTTCA 143352
Query 43849 CGAG-GCTGTAGCCTTTG--GGTTCTATGGCCAAATCTTGGGCGCTGTACAGATCGTACC 43905
| || || | || | | ||| || || |||| | ||| |||||||| || || |
Sbjct 143353 CAAGCACTTTCTCCATCGGTGGTACTGTG---TAATCATAGGCACTGTACAGGTCATAGC 143409
Query 43906 CGGCGGAGAGCTTGGATCCTTTGGTGGG 43933
| |||| | | ||| || ||||||||
Sbjct 143410 CCGCGGTGCACGCGGACCCGTTGGTGGG 143437
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447857926555200
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