Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_006949.1
Length=46900
Score E
Sequences producing significant alignments: (Bits) Value
seq23535 159 1e-34
>seq23535
Length=854
Score = 159 bits (176), Expect = 1e-34
Identities = 282/407 (69%), Gaps = 3/407 (1%)
Strand=Plus/Plus
Query 500 GGTGGACGTGGATCTGCTAAGACGCGTACTTTTGCACTAATGACTGCCGTCAAAGCGTAT 559
||||| ||||||||||| ||||| || | |||||||| |||||||| |||| | |||
Sbjct 163 GGTGGTCGTGGATCTGCCAAGACTCGATCATTTGCACTTATGACTGCTATCAAGGGTTAT 222
Query 560 CAAGCGGCAGAAGCCAATATCAGTGGAGTTATCCTGTGCGCTCGAGAATACATGAACTCG 619
||||| || | ||||||||| | ||||| | || || |||| ||||||| ||
Sbjct 223 ATCTTTGCAGAGGCTCAAATCAGTGGAATGATCCTCGGTGCGCGTGAATTCATGAACACG 282
Query 620 CTGGAAGAATCCTCCATGGAGGAGGTAAAGCAGGCAATTCGCTCCGTGGCGTGGCTTGAC 679
|| ||||| || ||||| || | |||||||| || | ||| | | || |
Sbjct 283 CTTTCTGAATCTTCAATGGAAGAAATCAAGCAGGCGATACAGTCCACACCATTTCTGAAT 342
Query 680 GATTACTTCGACATTGGAGAGAAATACATCAGGACAAAGAACCGCAAGGTCAGCTATGTA 739
|||| | || ||||| || | || || | || || ||| | ||||| ||||
Sbjct 343 AATTATTATGATATTGGTGAAAGTTATATACGTACCAAAAACAAAAGAGTCAGTTATGGC 402
Query 740 TTCTGC-GGTCTTCGCCATAACCTAGACAGCATCAAATCAAAAGCGCGAATTCTTGTAGC 798
|| ||| ||||| || ||||||||| ||||||| ||||| |||||||| ||| | |
Sbjct 403 TT-TGCTGGTCTACGGCATAACCTAAACAGCATTAAATCTAAAGCGCGTATTTTGCTTTG 461
Query 799 CTGGGTTGACGAGGCCGAGTCTGTTTCTTCGACTGCGTGGAAAAAGCTTCGCCCGACCGT 858
||||||||| ||||| || |||||| | ||| ||| || | | || || ||
Sbjct 462 CTGGGTTGATGAGGCTGAAGATGTTTCAGAGCTTGCTTGGCGTAAATTACTACCCACTGT 521
Query 859 TCGTGAAGAAGGCTCAGAAATCTGGGTTACGTGGAACCCGGAGAAGG 905
|||||||| |||||| | ||| |||| ||||| || || ||||
Sbjct 522 GCGTGAAGATAACTCAGAGGTTTGGATTACATGGAATCCTGA-AAGG 567
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 149820711946080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |