Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq23535 159 1e-34 >seq23535 Length=854 Score = 159 bits (176), Expect = 1e-34 Identities = 282/407 (69%), Gaps = 3/407 (1%) Strand=Plus/Plus Query 500 GGTGGACGTGGATCTGCTAAGACGCGTACTTTTGCACTAATGACTGCCGTCAAAGCGTAT 559 ||||| ||||||||||| ||||| || | |||||||| |||||||| |||| | ||| Sbjct 163 GGTGGTCGTGGATCTGCCAAGACTCGATCATTTGCACTTATGACTGCTATCAAGGGTTAT 222 Query 560 CAAGCGGCAGAAGCCAATATCAGTGGAGTTATCCTGTGCGCTCGAGAATACATGAACTCG 619 ||||| || | ||||||||| | ||||| | || || |||| ||||||| || Sbjct 223 ATCTTTGCAGAGGCTCAAATCAGTGGAATGATCCTCGGTGCGCGTGAATTCATGAACACG 282 Query 620 CTGGAAGAATCCTCCATGGAGGAGGTAAAGCAGGCAATTCGCTCCGTGGCGTGGCTTGAC 679 || ||||| || ||||| || | |||||||| || | ||| | | || | Sbjct 283 CTTTCTGAATCTTCAATGGAAGAAATCAAGCAGGCGATACAGTCCACACCATTTCTGAAT 342 Query 680 GATTACTTCGACATTGGAGAGAAATACATCAGGACAAAGAACCGCAAGGTCAGCTATGTA 739 |||| | || ||||| || | || || | || || ||| | ||||| |||| Sbjct 343 AATTATTATGATATTGGTGAAAGTTATATACGTACCAAAAACAAAAGAGTCAGTTATGGC 402 Query 740 TTCTGC-GGTCTTCGCCATAACCTAGACAGCATCAAATCAAAAGCGCGAATTCTTGTAGC 798 || ||| ||||| || ||||||||| ||||||| ||||| |||||||| ||| | | Sbjct 403 TT-TGCTGGTCTACGGCATAACCTAAACAGCATTAAATCTAAAGCGCGTATTTTGCTTTG 461 Query 799 CTGGGTTGACGAGGCCGAGTCTGTTTCTTCGACTGCGTGGAAAAAGCTTCGCCCGACCGT 858 ||||||||| ||||| || |||||| | ||| ||| || | | || || || Sbjct 462 CTGGGTTGATGAGGCTGAAGATGTTTCAGAGCTTGCTTGGCGTAAATTACTACCCACTGT 521 Query 859 TCGTGAAGAAGGCTCAGAAATCTGGGTTACGTGGAACCCGGAGAAGG 905 |||||||| |||||| | ||| |||| ||||| || || |||| Sbjct 522 GCGTGAAGATAACTCAGAGGTTTGGATTACATGGAATCCTGA-AAGG 567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149820711946080