Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq36461 120 3e-22
seq29194 120 3e-22
seq69634 111 2e-19
seq5469 100 3e-16
seq26065 96.9 4e-15
seq29163 86.0 7e-12
>seq36461
Length=35414
Score = 120 bits (132), Expect = 3e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 130656 TCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCA 130715
|| || |||||||||| | | ||||| ||||||| ||||||||| |||| | |
Sbjct 17472 TCCTCCTCCGTTTCAAACTGAGCAAGAACAGCTCCCAGTGAAGTACAGGATGTCTGACTG 17413
Query 130716 AATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCAT 130775
||||||||||||||||| ||||||||||| ||||| || ||| ||||||||||||||
Sbjct 17412 AATGTCCAATTTTTTGAGTCTTCAGAAAAATAAAAACACTTACTCCCAAATCCAATCCAC 17353
Query 130776 CCCTTTGGGCAAGT 130789
|| |||||||| ||
Sbjct 17352 CCTTTTGGGCAGGT 17339
>seq29194
Length=1480
Score = 120 bits (132), Expect = 3e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 130656 TCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCA 130715
|| || |||||||||| | | ||||| ||||||| ||||||||| |||| | |
Sbjct 989 TCCTCCTCCGTTTCAAACTGAGCAAGAACAGCTCCCAGTGAAGTACAGGATGTCTGACTG 930
Query 130716 AATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCAT 130775
||||||||||||||||| ||||||||||| ||||| || ||| ||||||||||||||
Sbjct 929 AATGTCCAATTTTTTGAGTCTTCAGAAAAATAAAAACACTTACTCCCAAATCCAATCCAC 870
Query 130776 CCCTTTGGGCAAGT 130789
|| |||||||| ||
Sbjct 869 CCTTTTGGGCAGGT 856
>seq69634
Length=96752
Score = 111 bits (122), Expect = 2e-19
Identities = 103/131 (79%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 130656 TCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCA 130715
|| || ||| |||||| | | ||||| ||||||| ||||||||| |||| | |
Sbjct 79834 TCCTCCTCCATTTCAAACTGAGCAAGAACAGCTCCCACTGAAGTACAGGATGTCTGACTG 79775
Query 130716 AATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCAT 130775
||||||||||||||||| ||||||||||| ||||| || ||| ||||||||||||||
Sbjct 79774 AATGTCCAATTTTTTGAGTCTTCAGAAAAATAAAAACACTTACTCCCAAATCCAATCCAC 79715
Query 130776 CCCTTTGGGCA 130786
|| | ||||||
Sbjct 79714 CCTTCTGGGCA 79704
>seq5469
Length=378230
Score = 100 bits (110), Expect = 3e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712
|| || || ||| |||||| | | ||||| ||| ||| | |||||| |||| |
Sbjct 142110 AGCTCCTCCTCCATTTCAAACTGAGCAAGAACAGCTTCCATTTTAGTACAGGATGTCTGA 142169
Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772
| |||||||||| ||||| ||||||||||| ||||| || ||| ||||||||||||
Sbjct 142170 CTGAATGTCCAATCCTTTGATTCTTCAGAAAAATAAAAACACTTACTCCCAAATCCAATC 142229
Query 130773 CATCCCTTTGGGCAAGTAACATA 130795
||||| | |||||| || |||||
Sbjct 142230 CATCCTTCTGGGCAGGTGACATA 142252
Score = 96.9 bits (106), Expect = 4e-15
Identities = 101/133 (76%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 130663 CCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCAAATGTCC 130722
||||||||| | | ||||| ||| || | || |||| |||| | | |||||||
Sbjct 200352 CCGTTTCAAACTGAGCAAGAACAGCTTCCGTTTTAGCACAAGATGTCTGACTGAATGTCC 200411
Query 130723 AATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCATCCCTTTG 130782
||| ||||| ||||||||||| ||||| || ||| ||||||||||||||||| | ||
Sbjct 200412 AATCCTTTGATTCTTCAGAAAAATAAAAACACTTACTCCCAAATCCAATCCATCCTTCTG 200471
Query 130783 GGCAAGTAACATA 130795
|||| || |||||
Sbjct 200472 GGCAGGTGACATA 200484
Score = 95.1 bits (104), Expect = 1e-14
Identities = 99/130 (76%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 130665 GTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCAAATGTCCAA 130724
||||||| | | |||| ||| ||||||||||||| ||||| | | ||||||||
Sbjct 240844 GTTTCAAACTGAGCAAGGACAGCTTCCAATGAAGTACAGAATGTCTGACTGAATGTCCAG 240903
Query 130725 TTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCATCCCTTTGGG 130784
|| ||| ||||| ||||| ||||| |||||| ||||||||| |||||||| ||| |
Sbjct 240904 TTCCTTGTGTCTTCCGAAAAATAAAAACATTTACTTCCAAATCCTATCCATCCTTTTAAG 240963
Query 130785 CAAGTAACAT 130794
|| | |||||
Sbjct 240964 CAGGGAACAT 240973
>seq26065
Length=1373002
Score = 96.9 bits (106), Expect = 4e-15
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185
|||||||||| |||||||| | ||| ||||||||| ||| || ||||| | | |
Sbjct 1028173 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAAC 1028114
Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245
||||| || ||||| ||| || || |||||||| || || || || || || ||
Sbjct 1028113 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTTT 1028054
Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAA 21276
||||||||||||| |||||||| | || |||
Sbjct 1028053 CCATAAAATCAAAGGGATTTTCTGCTTGAAA 1028023
>seq29163
Length=2664742
Score = 86.0 bits (94), Expect = 7e-12
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 21168 ttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227
||||||| | ||||||| | ||||| || | ||||| || || || || || ||||| |
Sbjct 303118 TTGACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 303059
Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267
| |||| ||| ||| ||||||||| ||||||||||||||
Sbjct 303058 CCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTC 303019
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531386717876800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |