Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq36461 120 3e-22 seq29194 120 3e-22 seq69634 111 2e-19 seq5469 100 3e-16 seq26065 96.9 4e-15 seq29163 86.0 7e-12 >seq36461 Length=35414 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 130656 TCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCA 130715 || || |||||||||| | | ||||| ||||||| ||||||||| |||| | | Sbjct 17472 TCCTCCTCCGTTTCAAACTGAGCAAGAACAGCTCCCAGTGAAGTACAGGATGTCTGACTG 17413 Query 130716 AATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCAT 130775 ||||||||||||||||| ||||||||||| ||||| || ||| |||||||||||||| Sbjct 17412 AATGTCCAATTTTTTGAGTCTTCAGAAAAATAAAAACACTTACTCCCAAATCCAATCCAC 17353 Query 130776 CCCTTTGGGCAAGT 130789 || |||||||| || Sbjct 17352 CCTTTTGGGCAGGT 17339 >seq29194 Length=1480 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 130656 TCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCA 130715 || || |||||||||| | | ||||| ||||||| ||||||||| |||| | | Sbjct 989 TCCTCCTCCGTTTCAAACTGAGCAAGAACAGCTCCCAGTGAAGTACAGGATGTCTGACTG 930 Query 130716 AATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCAT 130775 ||||||||||||||||| ||||||||||| ||||| || ||| |||||||||||||| Sbjct 929 AATGTCCAATTTTTTGAGTCTTCAGAAAAATAAAAACACTTACTCCCAAATCCAATCCAC 870 Query 130776 CCCTTTGGGCAAGT 130789 || |||||||| || Sbjct 869 CCTTTTGGGCAGGT 856 >seq69634 Length=96752 Score = 111 bits (122), Expect = 2e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 130656 TCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCA 130715 || || ||| |||||| | | ||||| ||||||| ||||||||| |||| | | Sbjct 79834 TCCTCCTCCATTTCAAACTGAGCAAGAACAGCTCCCACTGAAGTACAGGATGTCTGACTG 79775 Query 130716 AATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCAT 130775 ||||||||||||||||| ||||||||||| ||||| || ||| |||||||||||||| Sbjct 79774 AATGTCCAATTTTTTGAGTCTTCAGAAAAATAAAAACACTTACTCCCAAATCCAATCCAC 79715 Query 130776 CCCTTTGGGCA 130786 || | |||||| Sbjct 79714 CCTTCTGGGCA 79704 >seq5469 Length=378230 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || ||| |||||| | | ||||| ||| ||| | |||||| |||| | Sbjct 142110 AGCTCCTCCTCCATTTCAAACTGAGCAAGAACAGCTTCCATTTTAGTACAGGATGTCTGA 142169 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | |||||||||| ||||| ||||||||||| ||||| || ||| |||||||||||| Sbjct 142170 CTGAATGTCCAATCCTTTGATTCTTCAGAAAAATAAAAACACTTACTCCCAAATCCAATC 142229 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||||| | |||||| || ||||| Sbjct 142230 CATCCTTCTGGGCAGGTGACATA 142252 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 130663 CCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCAAATGTCC 130722 ||||||||| | | ||||| ||| || | || |||| |||| | | ||||||| Sbjct 200352 CCGTTTCAAACTGAGCAAGAACAGCTTCCGTTTTAGCACAAGATGTCTGACTGAATGTCC 200411 Query 130723 AATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCATCCCTTTG 130782 ||| ||||| ||||||||||| ||||| || ||| ||||||||||||||||| | || Sbjct 200412 AATCCTTTGATTCTTCAGAAAAATAAAAACACTTACTCCCAAATCCAATCCATCCTTCTG 200471 Query 130783 GGCAAGTAACATA 130795 |||| || ||||| Sbjct 200472 GGCAGGTGACATA 200484 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 130665 GTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCAAATGTCCAA 130724 ||||||| | | |||| ||| ||||||||||||| ||||| | | |||||||| Sbjct 240844 GTTTCAAACTGAGCAAGGACAGCTTCCAATGAAGTACAGAATGTCTGACTGAATGTCCAG 240903 Query 130725 TTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCATCCCTTTGGG 130784 || ||| ||||| ||||| ||||| |||||| ||||||||| |||||||| ||| | Sbjct 240904 TTCCTTGTGTCTTCCGAAAAATAAAAACATTTACTTCCAAATCCTATCCATCCTTTTAAG 240963 Query 130785 CAAGTAACAT 130794 || | ||||| Sbjct 240964 CAGGGAACAT 240973 >seq26065 Length=1373002 Score = 96.9 bits (106), Expect = 4e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| |||||||| | ||| ||||||||| ||| || ||||| | | | Sbjct 1028173 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAAC 1028114 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| ||| || || |||||||| || || || || || || || Sbjct 1028113 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTTT 1028054 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAA 21276 ||||||||||||| |||||||| | || ||| Sbjct 1028053 CCATAAAATCAAAGGGATTTTCTGCTTGAAA 1028023 >seq29163 Length=2664742 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 21168 ttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227 ||||||| | ||||||| | ||||| || | ||||| || || || || || ||||| | Sbjct 303118 TTGACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 303059 Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 | |||| ||| ||| ||||||||| |||||||||||||| Sbjct 303058 CCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTC 303019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531386717876800