Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq36501 140 4e-28
seq29163 129 7e-25
seq26065 107 2e-18
seq65209 95.1 2e-14
seq6493 82.4 1e-10
>seq36501
Length=2370580
Score = 140 bits (154), Expect = 4e-28
Identities = 113/137 (82%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396
|| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |
Sbjct 2290869 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 2290810
Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456
||||||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||
Sbjct 2290809 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 2290750
Query 62457 CTATTTCTAAGACCGTA 62473
|| ||||| | ||| ||
Sbjct 2290749 CTGTTTCTTATACCATA 2290733
Score = 96.9 bits (106), Expect = 4e-15
Identities = 121/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014
|||| |||| ||| || ||||| ||||| | || || ||||| || || || || || |
Sbjct 2267071 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 2267012
Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074
|||||||||| || || | ||||| | || || ||| | || || |||| ||| ||||
Sbjct 2267011 TGGCATAATCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 2266952
Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120
||| || || || || ||| | |||| ||||| || || |||||
Sbjct 2266951 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 2266906
Score = 91.5 bits (100), Expect = 2e-13
Identities = 134/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634
|||| || || ||||| || | || || || || ||||| || || || || || || |
Sbjct 2286200 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 2286141
Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694
||||||||||||| ||||||| |||||| | || || || | || ||||| || |
Sbjct 2286140 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 2286081
Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754
| | | |||||||| || || || | ||||| || ||||| || || || | ||| |
Sbjct 2286080 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGCACCCCAATTCCAATGGGGCGATGGC 2286021
Query 62755 TCTTATTAGA 62764
||||| ||
Sbjct 2286020 GTTTATTCGA 2286011
>seq29163
Length=2664742
Score = 129 bits (142), Expect = 7e-25
Identities = 101/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||||||||| ||||| ||||| |||||||||||||| || ||||| || || || || |
Sbjct 301517 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 301458
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| ||||| || || || || || ||||||||||| ||||| |||||||||||||
Sbjct 301457 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 301398
Query 33446 C 33446
|
Sbjct 301397 C 301397
Score = 111 bits (122), Expect = 2e-19
Identities = 99/124 (80%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623
|||||||| ||||| || || | |||||||||||||| ||||| |||||||| |||||
Sbjct 299832 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 299773
Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683
|| || || || |||||||| | ||||||||||||||| |||||| | ||| || ||
Sbjct 299772 AATTTGGAAGCCATAGAAACAACGAGCCTCGGTAATCTGAACTTCTTGGCTAAACCGCTC 299713
Query 33684 CGCC 33687
| ||
Sbjct 299712 CACC 299709
>seq26065
Length=1373002
Score = 107 bits (118), Expect = 2e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387
|| ||||| || || || || |||||||| |||||||| ||||| || || | || ||
Sbjct 1017726 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 1017667
Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446
||||| ||||| | ||| || ||||| || ||||| ||||||||||| |||||||||||
Sbjct 1017666 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 1017608
>seq65209
Length=3338390
Score = 95.1 bits (104), Expect = 2e-14
Identities = 151/216 (70%), Gaps = 3/216 (1%)
Strand=Plus/Plus
Query 31086 ATCTAGAGATTGTACTTCTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGC 31145
||||| | ||| ||||| || | |||||| ||| |||| |||| | | || |||| ||
Sbjct 2239533 ATCTAAAATTTGAACTTCCTCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTATGC 2239592
Query 31146 TATTCTATCTCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCC 31205
||| ||| || | || || | |||| | ||| ||| ||||| || | || ||
Sbjct 2239593 AGTTCGATCACCCTTTTTGACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACC 2239652
Query 31206 TATGTTTCCCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAG 31262
| ||||| ||||||||||| ||||| ||||| |||||| ||| || | ||||
Sbjct 2239653 AACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGC 2239712
Query 31263 GGACAGACCAGACCTAGGAGCTATTCTACCATAGCA 31298
| || ||||| | |||||| | ||| ||||||||
Sbjct 2239713 TGCCAAGCCAGAACGAGGAGCCACTCTTCCATAGCA 2239748
>seq6493
Length=163338
Score = 82.4 bits (90), Expect = 1e-10
Identities = 174/257 (68%), Gaps = 7/257 (3%)
Strand=Plus/Plus
Query 31047 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATTTGTACTATCTAGAGATTGTACTTCT 31104
||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| |||||
Sbjct 143063 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTC--ATCTAAAATTTGAACTTCC 143120
Query 31105 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31164
|| | |||||| ||| |||| | || | | || ||||| || |||| ||| || | ||
Sbjct 143121 TCTATTTCTGGGTAAAATATCCATTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 143180
Query 31165 ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 31224
|| | |||| | ||| ||| ||||| || | || || | ||| | |||||||||
Sbjct 143181 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTACTCTATAATCT 143240
Query 31225 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 31281
|| ||||| ||||| || ||| ||| || | |||| | || | ||| | ||||
Sbjct 143241 TCATCTATGACACCAGCTTCTACATCTATGAAGTGTTTTGTTGCCAAGCTAGAACGAGGA 143300
Query 31282 GCTATTCTACCATAGCA 31298
|| ||| ||||||||
Sbjct 143301 GCCGCTCTTCCATAGCA 143317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622345121531200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |