Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq23781 129 2e-24 seq36501 91.5 4e-13 >seq23781 Length=1882226 Score = 129 bits (142), Expect = 2e-24 Identities = 401/614 (65%), Gaps = 10/614 (2%) Strand=Plus/Plus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 ||||| || || ||||| || || | ||||| || || | || || | |||||| Sbjct 24840 TTTCCTCTGCTGACAACCAAACGTGTTTTCTGGAAAGGTGTTTTGGAGGAGTTGCTGTGG 24899 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGAT 111434 ||||| ||| || || || || ||||| | | || || |||||||||||| Sbjct 24900 TTTATCAAGGGATCCACCAACGCTAAGGAACTGTCTTCCAAGGGAGTGAAAATTTGGGAT 24959 Query 111435 GGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGT-CGACAACGAAGAAGGTGA 111493 | || || || || ||| |||| | | |||| ||| | | | | | ||||| || Sbjct 24960 GCCAACGGGTCCCGAGAC-TTCTTGGATGGCTTGGGCTTCTCCAATAGAGCTGAAGGGGA 25018 Query 111494 TCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCA 111553 | | || || ||||| || || || ||| | || ||||| || || |||||| ||| Sbjct 25019 TTTGGGCCCGGTTTATGGCTTCCAGTGGAGGCATTTTGGGGCTGAATACAAAGATATG-- 25076 Query 111554 CGACTCATATGATTCA---CAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTAA 111610 || ||| || ||||| || ||| |||||| | || || || || || ||| || Sbjct 25077 -GATTCAGATTATTCAGGTCAAGGAGTAGATCAACTGCAAAAAGTGATCGACACAATCAA 25135 Query 111611 GAACAACCC-AACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAA 111669 | |||||| ||| | | | || || || |||| ||||| ||||| | | Sbjct 25136 AACCAACCCTAACAAC-AGAAGAATCATCCTGTGTGCTTGGAATCCAAAAGATCTCCCTC 25194 Query 111670 AAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTT 111729 ||||| || || ||||| || | |||||||| || || | ||| ||| | Sbjct 25195 TCATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTGAATGGGGAGCTGT 25254 Query 111730 CATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAA 111789 | ||||| |||| || | || | || || || || ||||| || || |||||||| | Sbjct 25255 CCTGCCAGTTGTACCAAAGGTCGGGAGACATGGGCCTGGGTGTGCCCTTCAATATTGCCA 25314 Query 111790 GTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCA 111849 | ||||| || || || | | | ||||| || | || | || || || ||||| ||| Sbjct 25315 GCTACGCCCTGCTCACCTACATGATCGCACACATCACGGACCTGAAGCCAGGTGACTTCG 25374 Query 111850 TTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAAACACAGT 111909 | ||| | | |||||||| || ||||| || ||||| || |||| || || ||| Sbjct 25375 TACACACTCTGGGAGATGCACACATTTACCTGAATCACATCGAGCCACTGAAGACTCAGC 25434 Query 111910 TGAAGCGCAAACCA 111923 | |||| ||||| Sbjct 25435 TTCAGCGAGAACCA 25448 >seq36501 Length=2370580 Score = 91.5 bits (100), Expect = 4e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| |||||||| || || || ||| Sbjct 2282860 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGTACCCCGTACATG 2282919 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| || | || || || | Sbjct 2282920 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACTTGGGAACCATCAAATGC 2282979 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | || || ||| Sbjct 2282980 AGCAACCTGTGCACAGAAATAGTGGAGTATACC 2283012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302062416464240