Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq33366 98.7 9e-16
seq70604 96.9 3e-15
seq34609 86.0 6e-12
seq37082 82.4 7e-11
>seq33366
Length=1752596
Score = 98.7 bits (108), Expect = 9e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065
||||||| | | ||| || || | || | ||||||||| || ||||||||||||||
Sbjct 780176 AGCCACCCCTAAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAG 780117
Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125
| ||||| || || ||||||||||| || |||| | | ||||||||| || |
Sbjct 780116 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGG 780057
Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185
| || ||||| || || ||| || ||| | | ||| | || || ||| ||| |
Sbjct 780056 GAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCA 779997
Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | ||| || ||||| || ||||| ||||| || |||||
Sbjct 779996 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATTTGCAT 779948
>seq70604
Length=2882449
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| || | | || ||||| ||| | || |||||||||||||||||||| ||
Sbjct 1789352 GCCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 1789411
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| || || || || || ||| |||| || |||| | | |||||||| |||||
Sbjct 1789412 CAAAGTACGTCCATCTTCCAGTTGCCTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 1789471
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|||||||| || || ||| || ||| | | || | ||||| | || || ||
Sbjct 1789472 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTGGAC 1789531
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | ||| || || ||||| || || ||||||||||||||
Sbjct 1789532 CTCAAGAGTGATGGTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCAT 1789579
>seq34609
Length=2775773
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | | || | ||| ||| | || |||||||||||||||||||| || |
Sbjct 2545715 CCACCACGAAGTCTCAACGCTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 2545774
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || || || || |||||||| | |||| | | |||||||| |||||
Sbjct 2545775 AAAGTACGTCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGA 2545834
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|||||||| || || ||| || ||| | | || | ||||| | || |||||
Sbjct 2545835 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCGACC 2545894
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | ||| || || || || || || | ||||||||||||
Sbjct 2545895 TCAAGAGTGATGGTCTTCCCTGTCAGGGTCTTCATGAAAATCTGCAT 2545941
>seq37082
Length=86608
Score = 82.4 bits (90), Expect = 7e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
||| || |||| | | ||| | | ||| | ||| ||||| || || || ||||| ||
Sbjct 35192 GCCGCCTCGCAGAGGAAGCGCCAGATGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGA 35251
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| ||| | ||||| |||| ||||| | | |||| | |||||||||||| || ||
Sbjct 35252 CAGAGTGTGGCCATCCTCCAGCTCTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTGG 35311
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCT-TGAGCTGCTCCACAGTATCGGTGGACTCGA 131185
||| || || | ||| |||||| ||| ||| ||| | || || ||| |||||
Sbjct 35312 GATGCCCTCCTCGTCTTGGATTTT-GGCTCTGACACTCTCAATGGTGTCACTGGGCTCGA 35370
Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||||| ||| || || | || || || || || ||||||||
Sbjct 35371 CCTCAAGGGTAATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 35419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471556599628800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |