Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq75383 100 2e-16
seq70604 93.3 3e-14
seq34609 93.3 3e-14
seq42836 87.8 1e-12
seq25926 87.8 1e-12
seq48502 86.0 4e-12
seq33366 82.4 5e-11
>seq75383
Length=1910755
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
||| || ||||| |||| |||| || |||||| |||||| || || ||||| |||||
Sbjct 170145 ACCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 170086
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
|| || | || || | ||||| |||||||| || || | || || || | |||
Sbjct 170085 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 170026
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
|| ||| |||||||| || || ||| || |||| || || || | || ||
Sbjct 170025 GATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 169966
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || || || ||||||||||| |||||||| ||||||||
Sbjct 169965 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169918
Score = 95.1 bits (104), Expect = 8e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|||||||| | || | |||| || |||||| |||||| || || ||||| ||||||
Sbjct 169232 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 169173
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || | || || | ||||| |||||||| || || | || || || | ||||
Sbjct 169172 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 169113
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||| |||||||| || || ||| || |||| || || || | || ||
Sbjct 169112 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 169053
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || || || ||||||||||| |||||||| ||||||||
Sbjct 169052 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169006
Score = 95.1 bits (104), Expect = 8e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|||||||| | || | |||| || |||||| |||||| || || ||||| ||||||
Sbjct 169460 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 169401
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || | || || | ||||| |||||||| || || | || || || | ||||
Sbjct 169400 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 169341
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||| |||||||| || || ||| || |||| || || || | || ||
Sbjct 169340 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 169281
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || || || ||||||||||| |||||||| ||||||||
Sbjct 169280 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169234
Score = 95.1 bits (104), Expect = 8e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|||||||| | || | |||| || |||||| |||||| || || ||||| ||||||
Sbjct 169688 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 169629
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || | || || | ||||| |||||||| || || | || || || | ||||
Sbjct 169628 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 169569
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||| |||||||| || || ||| || |||| || || || | || ||
Sbjct 169568 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 169509
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || || || ||||||||||| |||||||| ||||||||
Sbjct 169508 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169462
Score = 95.1 bits (104), Expect = 8e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|||||||| | || | |||| || |||||| |||||| || || ||||| ||||||
Sbjct 169916 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 169857
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || | || || | ||||| |||||||| || || | || || || | ||||
Sbjct 169856 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 169797
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||| |||||||| || || ||| || |||| || || || | || ||
Sbjct 169796 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 169737
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || || || ||||||||||| |||||||| ||||||||
Sbjct 169736 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169690
>seq70604
Length=2882449
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | |||||||||| |||||||||||| ||||| ||||||||| |||| | ||
Sbjct 1789367 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 1789426
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | ||| | || ||||| || || | ||| || || | || | ||||| || ||
Sbjct 1789427 TTCCAGTTGCCTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 1789486
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| || || ||| ||||| | | ||||| | || || | || || ||
Sbjct 1789487 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTGGACCTCAAGAGTGATGGT 1789546
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| ||||| | ||| |||||||| |||||||| ||
Sbjct 1789547 CTTCCCCGTTAGGGTCTTCACGAAAATCTGCATCTT 1789582
>seq34609
Length=2775773
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||| | | |||||||||| |||||||||||| ||||| ||||||||| |||| | ||
Sbjct 2545729 CAACGCTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 2545788
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | ||| || || |||| || || | ||| || || | || | ||||| || ||
Sbjct 2545789 TTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 2545848
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| || || ||| ||||| | | |||||| || || || | || || ||
Sbjct 2545849 CTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCGACCTCAAGAGTGATGGT 2545908
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| || |||| ||| |||| ||| |||||||| ||
Sbjct 2545909 CTTCCCTGTCAGGGTCTTCATGAAAATCTGCATCTT 2545944
>seq42836
Length=1893264
Score = 87.8 bits (96), Expect = 1e-12
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| |||||||||||| |||||||||||| ||||| ||||||||| |||| | ||
Sbjct 1011597 CAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 1011538
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | ||| || || ||||| || || | ||| || || | || | ||||| || ||
Sbjct 1011537 TTCCACTTGCTTCCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 1011478
Query 38225 C 38225
|
Sbjct 1011477 C 1011477
>seq25926
Length=4460019
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | | ||||||| |||||||||||| ||| | ||||||||| |||| | ||
Sbjct 2859484 CAACACTAGACAAAGAGTGGACTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCATC 2859543
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | ||| || || ||||| || || | ||| || || | || | ||||| || ||
Sbjct 2859544 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 2859603
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| || || ||| ||||| | ||||| || || || | || || ||
Sbjct 2859604 CTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCGACCTCAAGAGTGATGGT 2859663
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| | ||||| ||| |||||||| |||||||||||
Sbjct 2859664 CTTCCTCGTCAGGGTCTTCACGAAAATCTGCATGTT 2859699
>seq48502
Length=3436129
Score = 86.0 bits (94), Expect = 4e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008
||||||| ||||||||||| |||||||| | |||||||||||| |||||||||||| |
Sbjct 939570 CTCTCTTTAAAGTTCTTTTTAACTTTCCTTTACGGTACTTGTTGACTATCGGTCTCGTGC 939511
Query 20009 TAATATTTAGCCTTA 20023
||||||||||||
Sbjct 939510 CGGTATTTAGCCTTA 939496
>seq33366
Length=1752596
Score = 82.4 bits (90), Expect = 5e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| || | ||| | |||| || || || ||| || ||||| |||||||||||
Sbjct 780174 CCACCCCTAAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 780115
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | || | || || | || || |||||||| || || | || || || | |||
Sbjct 780114 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 780055
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||| || ||| || || ||||||||||| || || || | || ||
Sbjct 780054 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 779995
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| | || || || || || |||| |||||||||||| || ||||| ||
Sbjct 779994 TCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATTTGCATTTT 779945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334631566692920
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