Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq33366 107 2e-18 seq70604 95.1 1e-14 seq42836 91.5 1e-13 seq34609 86.0 5e-12 >seq33366 Length=1752596 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || |||||||| || || ||||| | ||||| || || |||| || || ||||| Sbjct 779942 GTCAAAATGCAAATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAG 780001 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || || | || || || || || ||||| || ||||| || Sbjct 780002 CCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCT 780061 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||||||||| ||| | || ||| |||||| | || ||| Sbjct 780062 GACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 780121 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 ||||||||||| ||||| || ||| Sbjct 780122 TACAACATTCAGAAAGAGTCGACC 780145 >seq70604 Length=2882449 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || || || |||| || || || |||||||||| || | || Sbjct 1789582 AAGATGCAGATTTTCGTGAAGACCCTAACGGGGAAGACCATCACTCTTGAGGTCCAGCCC 1789523 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || || || || || ||||| || ||||| || || Sbjct 1789522 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 1789463 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||| | || || ||||| |||| || | || ||| || || | || || ||| Sbjct 1789462 CAGCAAAGACTGATCTTTGCTGGCAGGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 1789403 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||||| || ||||| | ||| |||| ||| || | || || || Sbjct 1789402 AACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACTTCGTGGTGG 1789353 >seq42836 Length=1893264 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/220 (70%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACT-TTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 |||||||| |||||||| || ||| || || || || || ||||||| | || || | Sbjct 1011381 AAGATGCAGATTTTTGTGAAGACTCTTGACAGGGAAGACCATCACTCTCAAGGTCGAGCC 1011440 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | | || || | || ||| | | || || || || ||||| || ||||| || || Sbjct 1011441 CTCGGAAACAATAGAAGATGTAATGGTCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 1011500 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || ||| | || || ||||| || || || | || ||| || || | || || || Sbjct 1011501 CCAGCAAAGACTGATCTTTGCTGGGAAGCAAGTGGAAGATGGACGTACTTTGTCTGACTA 1011560 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 |||||||||||| || ||||| | |||||||| ||| || Sbjct 1011561 CAACATTCAAAAGGAGTCCACTCTTCATTTAGTGTTGAGA 1011600 >seq34609 Length=2775773 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| | || || | || || || || |||||||||| || || || Sbjct 2545944 AAGATGCAGATTTTCATGAAGACCCTGACAGGGAAGACCATCACTCTTGAGGTCGAGCCC 2545885 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || || || || || ||||| || ||||| || || Sbjct 2545884 TCAGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 2545825 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||| | || || |||| ||||| || | || ||| || || | || || ||| Sbjct 2545824 CAGCAAAGACTGATCTTTGTTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 2545765 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||||| || ||||| | ||| ||| ||| || | || || || Sbjct 2545764 AACATTCAAAAGGAGTCCACTCTTCATCTAGCGTTGAGACTTCGTGGTGG 2545715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419332474565800