Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq63175 95.1 2e-14 seq44401 95.1 2e-14 seq7409 93.3 9e-14 seq17843 91.5 3e-13 seq71848 89.7 1e-12 seq50288 89.7 1e-12 seq44626 89.7 1e-12 seq3292 86.0 1e-11 >seq63175 Length=1720526 Score = 95.1 bits (104), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 219237 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 219178 Query 142564 CCCACATCGGGCAGAAG 142580 ||||| | |||| |||| Sbjct 219177 CCCACGTTGGGCGGAAG 219161 >seq44401 Length=282712 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| Sbjct 94405 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 94346 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 94345 TCCCGGCAGAGA 94334 >seq7409 Length=2084756 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 105994 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 106053 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 106054 GCCCCACGTTGGGC 106067 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 119424 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 119365 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 119364 CCCACGTTGGGC 119353 >seq17843 Length=465851 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 85280 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 85221 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 85220 CCCCACGTTGGGC 85208 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 120685 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 120744 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 120745 CCCCACGTTGGGC 120757 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 90032 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 89973 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 89972 CCCACGTTGGGC 89961 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 111322 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 111381 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 111382 CCCACGTTGGGC 111393 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||| ||||| ||||||||||||| ||||||||||||||| Sbjct 97559 AGCCCGGCTAGCTCAGTCGGCAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 97500 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 97499 CCCCACGTTGGGC 97487 Score = 87.8 bits (96), Expect = 4e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 ||| |||||| |||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 115877 GATTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTT 115936 Query 142560 GAGCCCCACATCGGGC 142575 ||||||||| | |||| Sbjct 115937 GAGCCCCACGTTGGGC 115952 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 102637 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 102696 Query 142564 CCCAC 142568 ||||| Sbjct 102697 CCCAC 102701 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||||||| |||||| ||||||||||||| |||||||||||||||| Sbjct 107240 GCCCGGCTAGCTCAGTCGATAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 107299 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 107300 CCCACGTTGGGC 107311 >seq71848 Length=1335 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 455 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 514 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 515 CCCACGTTGGGC 526 >seq50288 Length=935119 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 11428 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 11369 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 11368 CCCACGTTGGGC 11357 >seq44626 Length=4984 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 206 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 265 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 266 CCCACGTTGGGC 277 >seq3292 Length=7324000 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||| || |||||||||| |||||| || ||||||||||||| |||||||||||| Sbjct 6855714 ATAGCCTGGCTAGCTCAGTCCGTAGAGTGCGAGACTCTTAATCTCAGGGTCGTGGGTTCA 6855773 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 6855774 AGCCCCACGTTGGGC 6855788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1026818560626120