Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq75383 179 7e-40
seq33366 165 1e-35
seq37082 109 1e-18
seq21339 84.2 4e-11
>seq75383
Length=1910755
Score = 179 bits (198), Expect = 7e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| | | ||||| |||| ||| || |||||||| || |||||||| || || ||
Sbjct 170144 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 170085
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||||||| | ||| |||||||| || || || || || ||||| || ||
Sbjct 170084 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 170025
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| || |||||||| ||||| ||||||||| |||||||||||| | || ||
Sbjct 170024 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 169965
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| ||||||||| || ||||| | |||||| ||||| ||||||||
Sbjct 169964 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169918
Score = 178 bits (196), Expect = 2e-39
Identities = 170/218 (78%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
||||| | |||| ||| || |||||||| || |||||||| || || || || || | |
Sbjct 169223 AGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 169164
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | ||| |||||||| || || || || || ||||| || || ||||| ||
Sbjct 169163 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCT 169104
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
|||||||| ||||| ||||||||| |||||||||||| | || || |||| ||||
Sbjct 169103 TTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 169044
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || ||||| | |||||| ||||| ||||||||
Sbjct 169043 ATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169006
Score = 178 bits (196), Expect = 2e-39
Identities = 170/218 (78%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
||||| | |||| ||| || |||||||| || |||||||| || || || || || | |
Sbjct 169451 AGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 169392
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | ||| |||||||| || || || || || ||||| || || ||||| ||
Sbjct 169391 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCT 169332
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
|||||||| ||||| ||||||||| |||||||||||| | || || |||| ||||
Sbjct 169331 TTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 169272
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || ||||| | |||||| ||||| ||||||||
Sbjct 169271 ATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169234
Score = 178 bits (196), Expect = 2e-39
Identities = 170/218 (78%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
||||| | |||| ||| || |||||||| || |||||||| || || || || || | |
Sbjct 169679 AGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 169620
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | ||| |||||||| || || || || || ||||| || || ||||| ||
Sbjct 169619 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCT 169560
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
|||||||| ||||| ||||||||| |||||||||||| | || || |||| ||||
Sbjct 169559 TTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 169500
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || ||||| | |||||| ||||| ||||||||
Sbjct 169499 ATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169462
Score = 178 bits (196), Expect = 2e-39
Identities = 170/218 (78%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
||||| | |||| ||| || |||||||| || |||||||| || || || || || | |
Sbjct 169907 AGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 169848
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | ||| |||||||| || || || || || ||||| || || ||||| ||
Sbjct 169847 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCT 169788
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
|||||||| ||||| ||||||||| |||||||||||| | || || |||| ||||
Sbjct 169787 TTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 169728
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || ||||| | |||||| ||||| ||||||||
Sbjct 169727 ATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169690
Score = 170 bits (188), Expect = 4e-37
Identities = 169/219 (77%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
||||| | |||| ||| || ||||||||||| |||||||| || || || || || | |
Sbjct 168995 AGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGC 168936
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | ||| |||||||| || || | || || ||||| || || ||||||||
Sbjct 168935 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCT 168876
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
|| ||||| ||||| ||||||| |||||||||||| | || || |||| |||
Sbjct 168875 TTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTCACTCGGCTCCACCTCCAGAGTG 168816
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|||||||| || ||||||||||| || || |||||||||
Sbjct 168815 ATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 168777
>seq33366
Length=1752596
Score = 165 bits (182), Expect = 1e-35
Identities = 175/231 (76%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || | ||| || | |||| ||| || || |||||||| || ||||| ||||| ||
Sbjct 780174 CCACCCCTAAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 780115
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | |||||| ||||| || ||||| || || ||||| || |||
Sbjct 780114 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 780055
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||||||||| || || ||||| ||||| || |||||||||||| | || ||
Sbjct 780054 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 779995
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
|||| ||||||||| || || || ||||| || ||||| || |||||| ||
Sbjct 779994 TCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATTTGCATTTTG 779944
>seq37082
Length=86608
Score = 109 bits (120), Expect = 1e-18
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318
|| || ||||||||||| ||||| || || || || || || ||||| || | ||
Sbjct 35217 TGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGTGGCCATCCTCCAGCTCT 35276
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| |||| ||| || || | || ||||| ||||| ||||| |||| |||||| || ||
Sbjct 35277 TTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCCTCGTCTTGGATTTTG 35336
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
|| |||| ||| |||||||| | || || || | ||| ||||| || ||| |
Sbjct 35337 GCTCTGACACTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTAATGGTCTTGCCCATC 35396
Query 68439 AGGGTCTTGACGAATATCTGCAT 68461
|||||||| || || ||||||||
Sbjct 35397 AGGGTCTTCACAAAGATCTGCAT 35419
>seq21339
Length=1573800
Score = 84.2 bits (92), Expect = 4e-11
Identities = 76/93 (82%), Gaps = 2/93 (2%)
Strand=Plus/Minus
Query 268403 GGGCTCTCGTGGTTGAAGAGGATGCCGTTGCAC-GCGAACATGCCATATGCCTCACGGTA 268461
||||||||||||||||||||||||||||| ||| || |||| | ||| ||||| ||| |
Sbjct 541378 GGGCTCTCGTGGTTGAAGAGGATGCCGTT-CACTGCAAACAGGTTATACGCCTCCCGGAA 541320
Query 268462 GTTCACGACCGTCCAGTATGCAAACATCTTTGC 268494
|||||| || ||||||| || | | ||||||
Sbjct 541319 GTTCACCACGATCCAGTAGGCGTAGAGCTTTGC 541287
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 920731651950400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |