Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq75383 179 7e-40 seq33366 165 1e-35 seq37082 109 1e-18 seq21339 84.2 4e-11 >seq75383 Length=1910755 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | | ||||| |||| ||| || |||||||| || |||||||| || || || Sbjct 170144 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 170085 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | ||| |||||||| || || || || || ||||| || || Sbjct 170084 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 170025 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| || |||||||| ||||| ||||||||| |||||||||||| | || || Sbjct 170024 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 169965 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || ||||| | |||||| ||||| |||||||| Sbjct 169964 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169918 Score = 178 bits (196), Expect = 2e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || |||||||| || |||||||| || || || || || | | Sbjct 169223 AGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 169164 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| |||||||| || || || || || ||||| || || ||||| || Sbjct 169163 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCT 169104 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| ||||||||| |||||||||||| | || || |||| |||| Sbjct 169103 TTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 169044 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||||| | |||||| ||||| |||||||| Sbjct 169043 ATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169006 Score = 178 bits (196), Expect = 2e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || |||||||| || |||||||| || || || || || | | Sbjct 169451 AGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 169392 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| |||||||| || || || || || ||||| || || ||||| || Sbjct 169391 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCT 169332 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| ||||||||| |||||||||||| | || || |||| |||| Sbjct 169331 TTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 169272 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||||| | |||||| ||||| |||||||| Sbjct 169271 ATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169234 Score = 178 bits (196), Expect = 2e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || |||||||| || |||||||| || || || || || | | Sbjct 169679 AGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 169620 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| |||||||| || || || || || ||||| || || ||||| || Sbjct 169619 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCT 169560 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| ||||||||| |||||||||||| | || || |||| |||| Sbjct 169559 TTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 169500 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||||| | |||||| ||||| |||||||| Sbjct 169499 ATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169462 Score = 178 bits (196), Expect = 2e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || |||||||| || |||||||| || || || || || | | Sbjct 169907 AGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 169848 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| |||||||| || || || || || ||||| || || ||||| || Sbjct 169847 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCT 169788 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| ||||||||| |||||||||||| | || || |||| |||| Sbjct 169787 TTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 169728 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||||| | |||||| ||||| |||||||| Sbjct 169727 ATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 169690 Score = 170 bits (188), Expect = 4e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || ||||||||||| |||||||| || || || || || | | Sbjct 168995 AGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGC 168936 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| |||||||| || || | || || ||||| || || |||||||| Sbjct 168935 CCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCT 168876 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || ||||| ||||| ||||||| |||||||||||| | || || |||| ||| Sbjct 168875 TTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTCACTCGGCTCCACCTCCAGAGTG 168816 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||||| || ||||||||||| || || ||||||||| Sbjct 168815 ATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 168777 >seq33366 Length=1752596 Score = 165 bits (182), Expect = 1e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || | ||| || | |||| ||| || || |||||||| || ||||| ||||| || Sbjct 780174 CCACCCCTAAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAA 780115 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| ||||| || ||||| || || ||||| || ||| Sbjct 780114 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 780055 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| || || ||||| ||||| || |||||||||||| | || || Sbjct 780054 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 779995 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 |||| ||||||||| || || || ||||| || ||||| || |||||| || Sbjct 779994 TCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATTTGCATTTTG 779944 >seq37082 Length=86608 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || ||||||||||| ||||| || || || || || || ||||| || | || Sbjct 35217 TGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGTGGCCATCCTCCAGCTCT 35276 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || |||| ||| || || | || ||||| ||||| ||||| |||| |||||| || || Sbjct 35277 TTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCCTCGTCTTGGATTTTG 35336 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 || |||| ||| |||||||| | || || || | ||| ||||| || ||| | Sbjct 35337 GCTCTGACACTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTAATGGTCTTGCCCATC 35396 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 |||||||| || || |||||||| Sbjct 35397 AGGGTCTTCACAAAGATCTGCAT 35419 >seq21339 Length=1573800 Score = 84.2 bits (92), Expect = 4e-11 Identities = 76/93 (82%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 268403 GGGCTCTCGTGGTTGAAGAGGATGCCGTTGCAC-GCGAACATGCCATATGCCTCACGGTA 268461 ||||||||||||||||||||||||||||| ||| || |||| | ||| ||||| ||| | Sbjct 541378 GGGCTCTCGTGGTTGAAGAGGATGCCGTT-CACTGCAAACAGGTTATACGCCTCCCGGAA 541320 Query 268462 GTTCACGACCGTCCAGTATGCAAACATCTTTGC 268494 |||||| || ||||||| || | | |||||| Sbjct 541319 GTTCACCACGATCCAGTAGGCGTAGAGCTTTGC 541287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920731651950400