Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq23781 215 5e-51 >seq23781 Length=1882226 Score = 215 bits (238), Expect = 5e-51 Identities = 440/651 (68%), Gaps = 2/651 (0%) Strand=Plus/Minus Query 20171 AGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCG 20230 |||||||| || || | ||| ||||| |||||||||| ||||| | || || || Sbjct 25423 AGTGGCTCGATGTGATTCAGGTAAATGTGTGCATCTCCCAGAGTGTGTACGAAGTCACCT 25364 Query 20231 GGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTA 20290 || | || | || | || || | ||| || || | |||| ||||||||||| || Sbjct 25363 GGCTTCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTG 25304 Query 20291 AAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCG 20350 || || || |||| ||||||||||||||||| || |||| ||| ||||| ||||| || Sbjct 25303 AAGGGCACACCCAGGCCCATGTCTCCCGACCTTTGGTACAACTGGCAGGACAGCTCCCCA 25244 Query 20351 TCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCC 20410 | | || || || || || | ||| || || || || ||||| | | | || Sbjct 25243 TTCACCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATCT 25184 Query 20411 GCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCC 20470 || ||||| ||||||| ||||||||||| | || || || |||| ||| || Sbjct 25183 TTTGGATTCCAAGCACACAGGATGATTCTTCTGTTGTTAGGGTTGGTTTTGATTGTGTCG 25124 Query 20471 A-CAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTA 20529 | || | | | || ||| || | || || |||| ||| || | |||| || ||| Sbjct 25123 ATCACTTTTTG-CAGTTGATCTACTCCTTGACCTGAATAATCTGAATCCATATCTTTGTA 25065 Query 20530 CGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCT 20589 | |||||||| |||||||||||||| || ||||| || ||||||||||| || ||| Sbjct 25064 TTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATCCCCTTCAGCTCT 25005 Query 20590 GTGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGAC 20649 | | | ||| || ||| ||| || | ||| || || ||||| || || || Sbjct 25004 ATTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATTTTCAC 24945 Query 20650 TCCTGTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTG 20709 ||| | || || ||| | | || || ||||| | |||||| |||| ||| | Sbjct 24944 TCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCCCTTGATAAACCACAGCAACTCCTC 24885 Query 20710 CACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCCGCAGACT 20769 || || ||| ||| || || || || || || || | ||||| | || | ||| | Sbjct 24884 CAAAACACCTTTCCAGAAAACACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGTT 24825 Query 20770 ATACCTGGCCTGCATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCGGTC 20820 |||| |||||||| || || | || |||||||| ||||||||||||| Sbjct 24824 GTACCGCGCCTGCATCCCGAACACCGACAGGGTGCCAGTGCCGGTGCGGTC 24774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440946213188800