Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq34609 120 7e-22 seq70604 118 2e-21 seq61258 105 2e-17 seq25926 105 2e-17 seq33366 100 7e-16 seq42836 98.7 2e-15 seq69229 87.8 4e-12 seq37082 87.8 4e-12 >seq34609 Length=2775773 Score = 120 bits (132), Expect = 7e-22 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || ||||| | | ||||||| ||| || ||||| || || ||||| | Sbjct 2545714 TCCACCACGAAGTCTCAACGCTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 2545773 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATC 288362 | || ||||| ||||| | ||| || || | |||||||| | |||| | || | Sbjct 2545774 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGA-- 2545831 Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || |||||||| ||||||||||| || || || || |||||||| | ||| | || Sbjct 2545832 -GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTC 2545890 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| |||||||| ||||| ||||| | ||| |||||||| Sbjct 2545891 GACCTCAAGAGTGATGGTCTTCCCTGTCAGGGTCTTCATGAAAATCTGCAT 2545941 >seq70604 Length=2882449 Score = 118 bits (130), Expect = 2e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 1789353 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 1789412 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || ||||| ||||| | ||| | || || |||||||| | |||| | || | Sbjct 1789413 AAAGTACGTCCATCTTCCAGTTGCCTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA--- 1789469 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| ||||||||||| || || || || |||||||| | ||| | | Sbjct 1789470 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTGG 1789529 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| |||||||| || || ||||| ||||| |||||||| Sbjct 1789530 ACCTCAAGAGTGATGGTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCAT 1789579 >seq61258 Length=1460494 Score = 105 bits (116), Expect = 2e-17 Identities = 166/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || |||| || || ||||||| ||| || ||||| || || |||| || Sbjct 487694 TCCACCACGACGTCTCAGCACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTTGGT 487635 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATC 288362 | | | ||| ||||| | |||||| || || | |||||| | |||| | || | Sbjct 487634 CAAAGA-CATCCATCTTCCAGTTGTTTGCCAGCAACGATCAGTCTTTGCTGGTCAGGA-- 487578 Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || | ||||| |||||||||||||| || || || |||||||| | ||| | | Sbjct 487577 -GGAACACCTTCCTTATCCTGGATTTTGGCCTTTACATTTTCTATTGTATCCAAGGGCTT 487519 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || | ||| | ||| ||||||| ||||| ||||| ||||| |||||||| ||| Sbjct 487518 GACCTTGAGAGAGATGCTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATCATG 487464 >seq25926 Length=4460019 Score = 105 bits (116), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | || ||| || ||| || ||||| || || |||| | Sbjct 2859470 CCACCACCAAGTCTCAACACTAGACAAAGAGTGGACTCCTTTTGAATGTTGCAGTCAGAC 2859529 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || ||||| ||||| | ||| || || || |||||||| | |||| | || | Sbjct 2859530 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA--- 2859586 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| ||||||||||| || || || || |||||| | | ||| | || Sbjct 2859587 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCG 2859646 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||||| ||||| ||||| ||||| |||||||| Sbjct 2859647 ACCTCAAGAGTGATGGTCTTCCTCGTCAGGGTCTTCACGAAAATCTGCAT 2859696 >seq33366 Length=1752596 Score = 100 bits (110), Expect = 7e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || || || | || ||||| || ||||| | || || || || ||| Sbjct 780138 TCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 780079 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || ||||| ||||||||||| || || ||||| || Sbjct 780078 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTC 780019 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| || || ||| Sbjct 780018 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACG 779959 Query 288463 AATATCTGCATTATG 288477 || || |||||| || Sbjct 779958 AAGATTTGCATTTTG 779944 >seq42836 Length=1893264 Score = 98.7 bits (108), Expect = 2e-15 Identities = 162/231 (70%), Gaps = 7/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | || | ||||| ||| || ||||| || || ||||| | Sbjct 1011611 CCACCACAAAGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 1011552 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || ||||| ||||| | ||| || || || |||||||| | |||| | || | Sbjct 1011551 AAAGTACGTCCATCTTCCACTTGCTTCCCAGCAAAGATCAGTCTTTGCTGGTCAGGA--- 1011495 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| ||||||||||| || | | || | |||||| | || | || Sbjct 1011494 GGAATTCCTTCCTTATCCTGGATCTTGACCATTACATCTTCTATTGTTTCCGAGGGCTCG 1011435 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTC-AGAGTCTTGACGAATATCTGCAT 288473 || | ||| ||||| |||||||| ||| |||||||| || || |||||||| Sbjct 1011434 ACCTTGAGAGTGATGGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCAT 1011384 >seq69229 Length=1436921 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||| | || ||| ||| ||| || ||||| || || ||||| | | || | | Sbjct 420450 AGTCTCAACACAAGAGGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 420509 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || ||||| | ||| || || || |||||||| | || || | | |||||||| Sbjct 420510 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGGTGGTCAGGAAGAATTCCTTCC 420569 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 ||||||||||| || || || | ||| |||| | ||| | | || || || ||| Sbjct 420570 TTATCCTGGATCTTGGCCTTTGCATTTACTATTGTATCCGAGGGCTTGACCTCAAGAGTG 420629 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||| | ||||| ||||| | ||| |||||||| Sbjct 420630 ATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCAT 420667 >seq37082 Length=86608 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||| ||||| | || ||| | || || || | | ||| || | |||| Sbjct 35229 TCTTTCTGGATATTGTAGTCTGACAGAGTGTGGCCATCCTCCAGCTCTTTGCCGGAGAAG 35288 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || |||||| || || | || |||||||| ||| | || | Sbjct 35289 ATCAGACGCTGCTGGTCTGGTGGGATGCCCTCCTCGTCTTGGATTTTGGCTCTGACACTC 35348 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || || || ||||| || |||| ||||| || Sbjct 35349 TCAATGGTGTCACTGGGCTCGACCTCAAGGGTAATGGTCTTGCCCATCAGGGTCTTCACA 35408 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 35409 AAGATCTGCAT 35419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178485760622960