Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq34609 120 7e-22
seq70604 118 2e-21
seq61258 105 2e-17
seq25926 105 2e-17
seq33366 100 7e-16
seq42836 98.7 2e-15
seq69229 87.8 4e-12
seq37082 87.8 4e-12
>seq34609
Length=2775773
Score = 120 bits (132), Expect = 7e-22
Identities = 166/231 (72%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| || ||||| | | ||||||| ||| || ||||| || || ||||| |
Sbjct 2545714 TCCACCACGAAGTCTCAACGCTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 2545773
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATC 288362
| || ||||| ||||| | ||| || || | |||||||| | |||| | || |
Sbjct 2545774 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGA-- 2545831
Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422
|| |||||||| ||||||||||| || || || || |||||||| | ||| | ||
Sbjct 2545832 -GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTC 2545890
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| |||||||| ||||| ||||| | ||| ||||||||
Sbjct 2545891 GACCTCAAGAGTGATGGTCTTCCCTGTCAGGGTCTTCATGAAAATCTGCAT 2545941
>seq70604
Length=2882449
Score = 118 bits (130), Expect = 2e-21
Identities = 165/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || ||||| | || ||||||| ||| || ||||| || || ||||| |
Sbjct 1789353 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 1789412
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363
| || ||||| ||||| | ||| | || || |||||||| | |||| | || |
Sbjct 1789413 AAAGTACGTCCATCTTCCAGTTGCCTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA--- 1789469
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| |||||||| ||||||||||| || || || || |||||||| | ||| | |
Sbjct 1789470 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTGG 1789529
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| |||||||| || || ||||| ||||| ||||||||
Sbjct 1789530 ACCTCAAGAGTGATGGTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCAT 1789579
>seq61258
Length=1460494
Score = 105 bits (116), Expect = 2e-17
Identities = 166/235 (71%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| || |||| || || ||||||| ||| || ||||| || || |||| ||
Sbjct 487694 TCCACCACGACGTCTCAGCACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTTGGT 487635
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATC 288362
| | | ||| ||||| | |||||| || || | |||||| | |||| | || |
Sbjct 487634 CAAAGA-CATCCATCTTCCAGTTGTTTGCCAGCAACGATCAGTCTTTGCTGGTCAGGA-- 487578
Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422
|| | ||||| |||||||||||||| || || || |||||||| | ||| | |
Sbjct 487577 -GGAACACCTTCCTTATCCTGGATTTTGGCCTTTACATTTTCTATTGTATCCAAGGGCTT 487519
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
|| | ||| | ||| ||||||| ||||| ||||| ||||| |||||||| |||
Sbjct 487518 GACCTTGAGAGAGATGCTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATCATG 487464
>seq25926
Length=4460019
Score = 105 bits (116), Expect = 2e-17
Identities = 162/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | ||||| | || ||| || ||| || ||||| || || |||| |
Sbjct 2859470 CCACCACCAAGTCTCAACACTAGACAAAGAGTGGACTCCTTTTGAATGTTGCAGTCAGAC 2859529
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363
| || ||||| ||||| | ||| || || || |||||||| | |||| | || |
Sbjct 2859530 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA--- 2859586
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| |||||||| ||||||||||| || || || || |||||| | | ||| | ||
Sbjct 2859587 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCG 2859646
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| ||||||| ||||| ||||| ||||| ||||||||
Sbjct 2859647 ACCTCAAGAGTGATGGTCTTCCTCGTCAGGGTCTTCACGAAAATCTGCAT 2859696
>seq33366
Length=1752596
Score = 100 bits (110), Expect = 7e-16
Identities = 139/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| || || || || || | || ||||| || ||||| | || || || || |||
Sbjct 780138 TCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 780079
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| || | ||| || | || || ||||| ||||||||||| || || ||||| ||
Sbjct 780078 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTC 780019
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || | || || || || ||||| ||||| |||||||| || || |||
Sbjct 780018 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACG 779959
Query 288463 AATATCTGCATTATG 288477
|| || |||||| ||
Sbjct 779958 AAGATTTGCATTTTG 779944
>seq42836
Length=1893264
Score = 98.7 bits (108), Expect = 2e-15
Identities = 162/231 (70%), Gaps = 7/231 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | ||||| | || | ||||| ||| || ||||| || || ||||| |
Sbjct 1011611 CCACCACAAAGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 1011552
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363
| || ||||| ||||| | ||| || || || |||||||| | |||| | || |
Sbjct 1011551 AAAGTACGTCCATCTTCCACTTGCTTCCCAGCAAAGATCAGTCTTTGCTGGTCAGGA--- 1011495
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| |||||||| ||||||||||| || | | || | |||||| | || | ||
Sbjct 1011494 GGAATTCCTTCCTTATCCTGGATCTTGACCATTACATCTTCTATTGTTTCCGAGGGCTCG 1011435
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTC-AGAGTCTTGACGAATATCTGCAT 288473
|| | ||| ||||| |||||||| ||| |||||||| || || ||||||||
Sbjct 1011434 ACCTTGAGAGTGATGGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCAT 1011384
>seq69229
Length=1436921
Score = 87.8 bits (96), Expect = 4e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315
||||| | || ||| ||| ||| || ||||| || || ||||| | | || | |
Sbjct 420450 AGTCTCAACACAAGAGGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 420509
Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375
|| ||||| | ||| || || || |||||||| | || || | | ||||||||
Sbjct 420510 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGGTGGTCAGGAAGAATTCCTTCC 420569
Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435
||||||||||| || || || | ||| |||| | ||| | | || || || |||
Sbjct 420570 TTATCCTGGATCTTGGCCTTTGCATTTACTATTGTATCCGAGGGCTTGACCTCAAGAGTG 420629
Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| |||||| | ||||| ||||| | ||| ||||||||
Sbjct 420630 ATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCAT 420667
>seq37082
Length=86608
Score = 87.8 bits (96), Expect = 4e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| |||||||| ||||| | || ||| | || || || | | ||| || | ||||
Sbjct 35229 TCTTTCTGGATATTGTAGTCTGACAGAGTGTGGCCATCCTCCAGCTCTTTGCCGGAGAAG 35288
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||||||||| || |||||| || || | || |||||||| ||| | || |
Sbjct 35289 ATCAGACGCTGCTGGTCTGGTGGGATGCCCTCCTCGTCTTGGATTTTGGCTCTGACACTC 35348
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || | || || || || || || ||||| || |||| ||||| ||
Sbjct 35349 TCAATGGTGTCACTGGGCTCGACCTCAAGGGTAATGGTCTTGCCCATCAGGGTCTTCACA 35408
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 35409 AAGATCTGCAT 35419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178485760622960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |