Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq33366 105 7e-18 seq75383 96.9 4e-15 seq37082 96.9 4e-15 seq3292 93.3 5e-14 seq42862 91.5 2e-13 seq62324 89.7 6e-13 seq37912 89.7 6e-13 seq28099 89.7 6e-13 seq753 89.7 6e-13 >seq33366 Length=1752596 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || ||||| |||||||||| ||||| || | || || |||||||| || || || Sbjct 780139 CTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 780080 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| | ||||||||| | || | || ||||| ||| ||| || || | | Sbjct 780079 GATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATT 780020 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| || | ||||| || | |||||||| ||||| || || || || || Sbjct 780019 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCAC 779960 Query 42197 AAAGATTTGCATTTTCAC 42214 |||||||||||||| || Sbjct 779959 GAAGATTTGCATTTTGAC 779942 >seq75383 Length=1910755 Score = 96.9 bits (106), Expect = 4e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | || | |||| |||| ||| ||| || || || ||||| |||| | Sbjct 169004 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 168945 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| | || || ||||| || || || || || | | ||||||||| | || Sbjct 168944 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 168885 Query 42102 ACGCTCTCCTTGTCCATG-ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || || ||| | | || || || |||| || | | ||||| |||| ||||| Sbjct 168884 ATGC-CTTCTTTTTCTTGTATCTTCACCTTGACATTCTCGATGGTGTCACTCGGCTCCAC 168826 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 || | ||||||||||| || || || |||||||||||||| |||||| || Sbjct 168825 CTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATTGTC 168774 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 154029 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 153970 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 153969 TACTAACGAGGA 153958 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 156896 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 156837 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 156836 TACTAACGAGGA 156825 >seq37082 Length=86608 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 42001 CCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTA 42060 ||| ||||| ||| ||| || || |||||||| || | |||||| | | || || | Sbjct 35212 CCAGATGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGTGGCCATCCTCCA 35271 Query 42061 GCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGA 42120 ||| || || | ||| || || ||||||||||| | ||| | || ||||| ||| || Sbjct 35272 GCTCTTTGCCGGAGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCCTCGTCTTGGA 35331 Query 42121 TTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGC 42180 |||| | ||| || | | ||||| || | || || || | || ||||| |||| Sbjct 35332 TTTTGGCTCTGACACTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTAATGGTCTTGC 35391 Query 42181 CCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || ||||| |||||||| ||||| Sbjct 35392 CCATCAGGGTCTTCACAAAGATCTGCAT 35419 >seq3292 Length=7324000 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 3737514 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3737455 Query 57067 TACTACCGAGGATTGA 57082 ||||| |||||| ||| Sbjct 3737454 TACTAACGAGGAGTGA 3737439 >seq42862 Length=585711 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 430303 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 430244 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 430243 ATACTAACGAGGA 430231 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 484087 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 484146 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 484147 TACTAACGAGGA 484158 >seq62324 Length=1487 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 623 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 682 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 683 TACTAACGAGGA 694 >seq37912 Length=820179 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 425272 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 425213 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 425212 TACTAACGAGGA 425201 >seq28099 Length=1080336 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 626407 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 626348 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 626347 TACTAACGAGGA 626336 >seq753 Length=977689 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 64405 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 64346 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 64345 TACTAACGAGGA 64334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542687784828800