Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20]
77,320 sequences; 2,650,836,958 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq33366 159 3e-34
seq75383 122 9e-23
seq70604 118 1e-21
seq34609 118 1e-21
seq25926 107 2e-18
seq42836 105 7e-18
>seq33366
Length=1752596
Score = 159 bits (176), Expect = 3e-34
Identities = 165/216 (76%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || || || | ||||| ||||| |||||||||||||| | | ||||| | ||
Sbjct 780160 AAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATC 780101
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||| ||||||||||||||| | ||||||| ||||||||| || ||||| ||||| || ||
Sbjct 780100 TTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATC 780041
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| || || ||| ||| ||| | || |||| || ||||| || | || | |||
Sbjct 780040 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 779981
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
||||||||||| ||||| ||||| |||||||||||
Sbjct 779980 CTTGCCGGTCAGGGTTTTCACGAAGATTTGCATTTT 779945
>seq75383
Length=1910755
Score = 122 bits (134), Expect = 9e-23
Identities = 148/199 (74%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || ||||| || |||||||| || | | ||||||| | ||||| ||||| || |||
Sbjct 168974 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 168915
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | || | || ||||||||| || || || ||||||||||||||||| || |||
Sbjct 168914 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCTTGTATCTTCACCTTG 168855
Query 64367 ACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425
||| ||| | || |||| |||| ||||| || | ||| | ||| || || || | ||
Sbjct 168854 ACATTCTCGATGGTGTCACTCGGC-TCCACCTCCAGAGTGATGGTTTTACCAGTGAGGGT 168796
Query 64426 TTTTACGAAAATTTGCATT 64444
||||| || || ||||||
Sbjct 168795 CTTTACAAAGATCTGCATT 168777
>seq70604
Length=2882449
Score = 118 bits (130), Expect = 1e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || || | ||| | ||||||||||| || || || |||||||||||||| || |
Sbjct 1789353 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 1789412
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || | ||||| || ||| |||| ||| | || || | |||||||| ||||||
Sbjct 1789413 AAAGTACGTCCATCTTCCAGTTGCCTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 1789472
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|||||||| || || || || || ||||||| || | |||||| || | ||
Sbjct 1789473 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTGGACC 1789532
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|| | ||| | |||||| || || | || || |||||||| ||||| ||
Sbjct 1789533 TCAAGAGTGATGGTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCATCTT 1789582
>seq34609
Length=2775773
Score = 118 bits (130), Expect = 1e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || || | ||| | | ||||||||| || || || |||||||||||||| || |
Sbjct 2545715 CCACCACGAAGTCTCAACGCTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 2545774
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || | ||||| || |||||||| || | || || | |||||||| ||||||
Sbjct 2545775 AAAGTACGTCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGA 2545834
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|||||||| || || || || || ||||||| || | |||||| || || ||
Sbjct 2545835 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCGACC 2545894
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|| | ||| | |||||| || |||| || || | |||||| ||||| ||
Sbjct 2545895 TCAAGAGTGATGGTCTTCCCTGTCAGGGTCTTCATGAAAATCTGCATCTT 2545944
>seq25926
Length=4460019
Score = 107 bits (118), Expect = 2e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287
||| | ||||||| || || || || |||||||||||| | || | | || || |
Sbjct 2859481 TCTCAACACTAGACAAAGAGTGGACTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCC 2859540
Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347
||||| || |||||||| ||| | || || | |||||||| |||||||||||||| ||
Sbjct 2859541 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 2859600
Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407
|| || || || ||||||| || |||||| || || || || | ||| |
Sbjct 2859601 ATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCGACCTCAAGAGTGAT 2859660
Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|||||| | |||| || || |||||||| ||||| ||
Sbjct 2859661 GGTCTTCCTCGTCAGGGTCTTCACGAAAATCTGCATGTT 2859699
>seq42836
Length=1893264
Score = 105 bits (116), Expect = 7e-18
Identities = 156/220 (71%), Gaps = 1/220 (0%)
Strand=Plus/Minus
Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287
||| | ||||| ||||| || || || |||||||||||||| || | | || || |
Sbjct 1011600 TCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCC 1011541
Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347
||||| | ||||| || ||| | || || | |||||||| |||||||||||||| ||
Sbjct 1011540 ATCTTCCACTTGCTTCCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 1011481
Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407
|| || || || | ||||| | || | ||| || || || || | | ||| |
Sbjct 1011480 ATCCTGGATCTTGACCATTACATCTTCTATTGTTTCCGAGGGCTCGACCTTGAGAGTGAT 1011421
Query 64408 GGTCTTGCCGGTCAA-AGTTTTTACGAAAATTTGCATTTT 64446
|||||| || ||||| ||| || || ||||| ||||| ||
Sbjct 1011420 GGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCATCTT 1011381
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499161893300800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |