Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq33366 159 3e-34 seq75383 122 9e-23 seq70604 118 1e-21 seq34609 118 1e-21 seq25926 107 2e-18 seq42836 105 7e-18 >seq33366 Length=1752596 Score = 159 bits (176), Expect = 3e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | ||||| ||||| |||||||||||||| | | ||||| | || Sbjct 780160 AAGGACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATC 780101 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||||||| | ||||||| ||||||||| || ||||| ||||| || || Sbjct 780100 TTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATC 780041 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| ||| | || |||| || ||||| || | || | ||| Sbjct 780040 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 779981 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||||||||| ||||| ||||| ||||||||||| Sbjct 779980 CTTGCCGGTCAGGGTTTTCACGAAGATTTGCATTTT 779945 >seq75383 Length=1910755 Score = 122 bits (134), Expect = 9e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | ||||||| | ||||| ||||| || ||| Sbjct 168974 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 168915 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || ||||||||| || || || ||||||||||||||||| || ||| Sbjct 168914 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCTTGTATCTTCACCTTG 168855 Query 64367 ACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | || |||| |||| ||||| || | ||| | ||| || || || | || Sbjct 168854 ACATTCTCGATGGTGTCACTCGGC-TCCACCTCCAGAGTGATGGTTTTACCAGTGAGGGT 168796 Query 64426 TTTTACGAAAATTTGCATT 64444 ||||| || || |||||| Sbjct 168795 CTTTACAAAGATCTGCATT 168777 >seq70604 Length=2882449 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| | ||||||||||| || || || |||||||||||||| || | Sbjct 1789353 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 1789412 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | ||||| || ||| |||| ||| | || || | |||||||| |||||| Sbjct 1789413 AAAGTACGTCCATCTTCCAGTTGCCTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 1789472 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || || || || || ||||||| || | |||||| || | || Sbjct 1789473 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTGGACC 1789532 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | |||||| || || | || || |||||||| ||||| || Sbjct 1789533 TCAAGAGTGATGGTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCATCTT 1789582 >seq34609 Length=2775773 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| | | ||||||||| || || || |||||||||||||| || | Sbjct 2545715 CCACCACGAAGTCTCAACGCTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 2545774 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | ||||| || |||||||| || | || || | |||||||| |||||| Sbjct 2545775 AAAGTACGTCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGA 2545834 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || || || || || ||||||| || | |||||| || || || Sbjct 2545835 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCGACC 2545894 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | |||||| || |||| || || | |||||| ||||| || Sbjct 2545895 TCAAGAGTGATGGTCTTCCCTGTCAGGGTCTTCATGAAAATCTGCATCTT 2545944 >seq25926 Length=4460019 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||||||| || || || || |||||||||||| | || | | || || | Sbjct 2859481 TCTCAACACTAGACAAAGAGTGGACTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCC 2859540 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| || |||||||| ||| | || || | |||||||| |||||||||||||| || Sbjct 2859541 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 2859600 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || ||||||| || |||||| || || || || | ||| | Sbjct 2859601 ATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCGACCTCAAGAGTGAT 2859660 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| | |||| || || |||||||| ||||| || Sbjct 2859661 GGTCTTCCTCGTCAGGGTCTTCACGAAAATCTGCATGTT 2859699 >seq42836 Length=1893264 Score = 105 bits (116), Expect = 7e-18 Identities = 156/220 (71%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||||| ||||| || || || |||||||||||||| || | | || || | Sbjct 1011600 TCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCC 1011541 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| | ||||| || ||| | || || | |||||||| |||||||||||||| || Sbjct 1011540 ATCTTCCACTTGCTTCCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 1011481 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || | ||||| | || | ||| || || || || | | ||| | Sbjct 1011480 ATCCTGGATCTTGACCATTACATCTTCTATTGTTTCCGAGGGCTCGACCTTGAGAGTGAT 1011421 Query 64408 GGTCTTGCCGGTCAA-AGTTTTTACGAAAATTTGCATTTT 64446 |||||| || ||||| ||| || || ||||| ||||| || Sbjct 1011420 GGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCATCTT 1011381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499161893300800