Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_010583.1 Length=111382 Score E Sequences producing significant alignments: (Bits) Value seq66703 196 3e-45 >seq66703 Length=1304 Score = 196 bits (216), Expect = 3e-45 Identities = 449/670 (67%), Gaps = 20/670 (3%) Strand=Plus/Minus Query 50861 TGATCTTCATAGATATGAAGATTAATAATCTTTTGACGAGCAATACCTGGCTTAAGACCT 50920 ||||||||||| ||||| ||| | ||||| ||| ||| | || | || | || Sbjct 799 TGATCTTCATAAATATGTGCATTTACGATCTTATGATAAGCTTTTCCGGCCTCGTGGCCC 740 Query 50921 GTAATCTGTGCCATAATAGCTAGAAGTGCATAGCATTGCACCATATTAAATACTTGGCCC 50980 ||||| || ||||| | |||||| | | | | ||| | | |||||| ||| || Sbjct 739 GTAATTTGAGCCATGAGAGCTAGTAAGGTAAACACTTGAATCTGATTAAAATTTTGACCT 680 Query 50981 AGCAAGAAATCATTAGACCTCTGGAAAGAGTTTAGGTATAGTGTATCACCTAAAATAGAG 51040 | | |||| || | || | || | | || || | ||||||| | || Sbjct 679 AATGGTACATCACATGAACGTTGTGATGAAGTCAAATAAAGCTTGCCACCTAACAACGAA 620 Query 51041 AATTGATGGGTATGCATACACGGACGTAGGCATCCTTTACGAAATTCCCCACGGGTTCCA 51100 ||| ||| ||||||||||| ||||||| ||||| || |||| || || || || | Sbjct 619 AATGTATGAGTATGCATACAAGGACGTAAACATCCCATATGAAACTCACCT-GGATTGTA 561 Query 51101 AAAG-TTAAAATTTCTCCACGATCGTCAATCCCTCTTTTCAAATTATGATAGACTTTGGC 51159 ||| ||| |||||| || || || ||||| || || ||| |||| ||||| || Sbjct 560 GAAGGTTAGAATTTCACCTCGGTCATCAATACCGTTTCGCAAGTTATCATAGATCTTATG 501 Query 51160 TAACTGATCAAATACCATACCATCAGAATTAGTCCAATGACGTCCTTGAACACCATAGAC 51219 | ||| ||||| || || | |||||| ||| || || || |||||||| || Sbjct 500 AAGCTGGTCAAACTCCTCTCCTACTGAATTACGCCACCTGCGCCCCTGTACACCATAAAC 441 Query 51220 TCGTCCCATATCATCCTCGCCTTTACGGAATGGATTACCTAGCCAGGCAATATTTTCATT 51279 ||| ||||||||||||| |||||||| | |||||| ||| ||| || ||||||||| Sbjct 440 TCGGCCCATATCATCCTTACCTTTACGATAAGGATTAGCTAACCAAGCTTCATTTTCATT 381 Query 51280 TGCATTAGCATTCCATGTATTAACACCAATAGCGCGGAATTGTGCTGCTGAGTCGTACCC 51339 |||||||| |||||||||||| |||||||| || || || ||||| || || || Sbjct 380 GGCATTAGCGTTCCATGTATTACATCCAATAGCTCGAAACTGAGCTGCGCTATCATAACC 321 Query 51340 ACGGAGATATCCGATCATTTCCATTATTGCTTGTTTAGCAAATGCT-TTACGAGTAGTTA 51398 ||| ||||| || | | ||| || || || || ||| || || |||||||||| Sbjct 320 ACGTAGATACCCTAATAATTCTGCGATAGC-TGCTTTCCAATAACTCTTTCGAGTAGTTA 262 Query 51399 CTA--GCG-GCAGT-----------TCTCCT--GCTCCTACGTTAAAGGTAAAGTCTGCA 51442 ||| || | ||| ||| | || |||||||| | || || ||| Sbjct 261 CTAAGNCGAGTAGTCACTAAAGGAAACTCATTAGCGCCTACGTTGTATTCTAAATCAGCA 202 Query 51443 TCAATAATGGTTAGGCAACGAACCCCTGTTCTAGGATTCGTTACCCATACACCCTCTTCA 51502 | ||||| ||||| |||||| || || | |||| |||||||||||||| ||| Sbjct 201 TTAATAACGGTTAAGCAACGCTTTCCAGTCCGTTCATTCTCGACCCATACACCCTCATCA 142 Query 51503 AGAATACGTT 51512 | ||||||| Sbjct 141 ACTATACGTT 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355961847410360