Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq75383 93.3 4e-14 seq42836 89.7 5e-13 seq36501 87.8 2e-12 >seq75383 Length=1910755 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || ||||||||||| || || ||| || || || ||||| |||| | Sbjct 168971 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCA 168912 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | | ||| ||||| || || || |||||||| || || || || | Sbjct 168911 AAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCTTGTATCTTCACCTTGACA 168852 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| ||| ||||||||| | || | ||||||||||| || || ||| Sbjct 168851 TTCTCGATGGTGTCACTCGGCTCCACCTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTT 168792 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 168791 ACAAAGATCTGCAT 168778 >seq42836 Length=1893264 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/214 (70%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| |||||||| | | ||||||||||||||||||||||| || |||||| || Sbjct 1011597 CAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 1011538 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || | ||| || || | | |||| || | || ||||| ||||| || ||||| || || Sbjct 1011537 TTCCACTTGCTTCCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 1011478 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || ||| | ||| | || || | | ||| |||| || || | || Sbjct 1011477 CTGGATCTTGACCATTACATCTTCTATTGTTTCCGAGGGCTCGACCTTGAGAGTGATGGT 1011418 Query 138582 TTTACCAGTC-AGAGTTTTTACAAAAATCTGCAT 138614 || || ||| ||||| || |||||||||||||| Sbjct 1011417 CTTCCCTGTCAAGAGTCTTCACAAAAATCTGCAT 1011384 >seq36501 Length=2370580 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 153642 TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTG 153701 |||| ||| || || | ||| |||||||||||||| ||| ||||| || ||||| ||| Sbjct 2283008 TACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTGGTTG 2282949 Query 153702 CTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 || || ||||| || | |||||| ||||||||||||| Sbjct 2282948 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGG 2282911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495782762390400