Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq34609 86.0 4e-12 seq70604 84.2 2e-11 seq42836 82.4 5e-11 >seq34609 Length=2775773 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || ||| |||||| || || || ||||| |||||||| || Sbjct 2545715 CCACCACGAAGTCTCAACGCTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 2545774 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||| | | |||| | || ||||| ||| Sbjct 2545775 AAAGTACGTCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGA 2545834 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||||| ||||| || || Sbjct 2545835 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGCTCGACC 2545894 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||||| || |||||||| || || | ||||| ||||| || Sbjct 2545895 TCAAGAGTGATGGTCTTCCCTGTCAGGGTCTTCATGAAAATCTGCATCTT 2545944 >seq70604 Length=2882449 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||| || | ||| || |||| |||||| || || || ||||| |||||||| || Sbjct 1789352 GCCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 1789411 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 | | | | | ||||| | ||| ||||||| | |||| | || ||||| || Sbjct 1789412 CAAAGTACGTCCATCTTCCAGTTGCCTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 1789471 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||| || || ||| |||||| ||||||| ||||| | || Sbjct 1789472 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTGGAC 1789531 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||||| || || || || || || || ||||| ||||| || Sbjct 1789532 CTCAAGAGTGATGGTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCATCTT 1789582 >seq42836 Length=1893264 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/232 (68%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||| | | ||| || ||||||||||| || || || ||||| |||||||| || Sbjct 1011612 GCCACCACAAAGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 1011553 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 | | | | | ||||| | ||| || ||||| | |||| | || ||||| || Sbjct 1011552 CAAAGTACGTCCATCTTCCACTTGCTTCCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 1011493 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||| || || ||| ||||| |||||| || || || || Sbjct 1011492 AATTCCTTCCTTATCCTGGATCTTGACCATTACATCTTCTATTGTTTCCGAGGGCTCGAC 1011433 Query 15129 GTCTAAGGTAATGGTTTTACCTGTC-AGAGTTTTTACAAAAATTTGCATATT 15179 | | || ||||| || |||||| ||||| || |||||||| ||||| || Sbjct 1011432 CTTGAGAGTGATGGTCTTCCCTGTCAAGAGTCTTCACAAAAATCTGCATCTT 1011381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357055216116200